Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21175 208 / 5e-65 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT1G51600 203 / 5e-63 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT4G24470 171 / 3e-50 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT5G61380 56 / 2e-08 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT4G34680 55 / 2e-08 GATA GATA3 GATA transcription factor 3 (.1.2) AT2G46670 54 / 2e-08 CCT motif family protein (.1) AT5G02810 56 / 3e-08 APRR7, PRR7 pseudo-response regulator 7 (.1) AT2G46790 55 / 4e-08 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT3G24050 52 / 2e-07 GATA GATA1 GATA transcription factor 1 (.1) AT5G60100 51 / 7e-07 APRR3 pseudo-response regulator 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110800 [exp] 539 / 0 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042200 [exp] 262 / 8e-85 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G116700 [exp] 260 / 4e-84 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.010G251600 [exp] 207 / 2e-64 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.007G116550 [exp] 198 / 8e-61 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152800 [exp] 190 / 4e-58 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.002G110900 [exp] 184 / 1e-55 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.017G042300 [exp] 69 / 2e-14 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.015G061900 [exp] 61 / 5e-10 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028166 [exp] 313 / 2e-102 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 184 / 8e-56 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10032839 [exp] 184 / 9e-56 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 155 / 2e-44 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10019077 [exp] 62 / 3e-10 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 62 / 4e-10 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10000566 [exp] 61 / 5e-10 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 60 / 1e-09 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10037398 [exp] 54 / 8e-08 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10042879 [exp] 53 / 9e-08 AT2G45050 147 / 1e-43 GATA transcription factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.005G152500.1 pacid=42804434 polypeptide=Potri.005G152500.1.p locus=Potri.005G152500 ID=Potri.005G152500.1.v4.1 annot-version=v4.1 ATGGCGGCGGCGGCGGCGACGACGACGAATCCACAGTCACTACAGGCGCGTCCGTACGAGGACCCCCGAACGCGAGCTTCAATACAGATCGACGACGACG ACGGAGAGTATGAAGACGCTGATGGTATGGATGGCATGAAAGAGGCAGCAACAGTAGCGCAAGTGAATTCAGGGGTGAGCGTGGCAGAGCACCACCGTGG AGTACGAGTAGGAGTTGGTGGTGGTGTGGTTACGACTTCGAGGACTAGTGAGCTCACTCTCTCTTTTGAAGGAGAAGTTTACGTTTTCCCTGCTGTTACC CCAGAAAAGGTGCAAGCAGTACTCTTGCTTCTGGGAGGAAGAGATATGCCCACTGCAGTACCTACTATTGAAGTGCCATATGATCAAAATAATAGGGGAG TGGTCGACAACCCAAAGTTCTCAAATCTTTCACGAAGAATAGCCTCACTTGTTAGATTCCGTGAAAAACGAAAGGAGAGATGTTTTGACAAGAAAATAAG ATACACTGTGCGAAAAGAGGTTGCACAGAGAATGCACCGCAAGAATGGGCAATTTGCATCCTTAAAAGAAAGCCCAGGTAGTTCAAGTTGGGACTCCAGT CAGAGTTGTCTTCAGGATGTCATACCTTGTCCAGAAACTGTTGTCAGGAGATGTCAGCACTGTGGTGTTAGTGAAAATAATACTCCTGCAATGCGTCGTG GACCAGCTGGACCCAGGACTTTGTGTAACGCATGTGGACTTATGTGGGCAAATAAGGGATCATTGAGGGATCTCAGTAAAGGAGGAAGGAATCTTCCAAT GGGCCAAATTGAACCTGGAACACCAATTGATGTCAAGCCTTCCATTATGGAAGGGGAATTCTCTGGTAACCAGGATGAGCATGGAACTGCTAAAAATCTT CCCAAGGCAGTTAATGAAGGATTCAACAATCGTTCTATCAATCCAGATGAAGTTTTGCAAGAAGCTGATCAAGATCTTACAAATACTTTGCCAATGGGAG CTGTCCATTCTTCTGGAGATGATGATGAGCAGGAACCACTGGTTGAGCTCGCTAGTCCTTCAGATACAGAACTTGACATTCCTGCTAATTTTGAGTAG
AA sequence Show only first row Show all	>Potri.005G152500.1 pacid=42804434 polypeptide=Potri.005G152500.1.p locus=Potri.005G152500 ID=Potri.005G152500.1.v4.1 annot-version=v4.1 MAAAAATTTNPQSLQARPYEDPRTRASIQIDDDDGEYEDADGMDGMKEAATVAQVNSGVSVAEHHRGVRVGVGGGVVTTSRTSELTLSFEGEVYVFPAVT PEKVQAVLLLLGGRDMPTAVPTIEVPYDQNNRGVVDNPKFSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSSWDSS QSCLQDVIPCPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGSLRDLSKGGRNLPMGQIEPGTPIDVKPSIMEGEFSGNQDEHGTAKNL PKAVNEGFNNRSINPDEVLQEADQDLTNTLPMGAVHSSGDDDEQEPLVELASPSDTELDIPANFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.005G152500 [exp]	0	1
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.010G090400 [exp]	1.00	0.8422
AT5G62960			unknown protein		Potri.015G078200 [exp]	3.46	0.7740
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	7.07	0.7304	Pt-PP1.5
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.014G083600 [exp]	9.79	0.7520
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	12.96	0.7886
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.008G064800 [exp]	15.74	0.7338
AT2G46540			unknown protein		Potri.014G100250 [exp]	16.12	0.6717
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.001G387100 [exp]	18.16	0.6911
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	18.81	0.7379
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Potri.018G081500 [exp]	18.84	0.7502

Compare expression of checked genes

Potri.005G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.