Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24480 1018 / 0 Protein kinase superfamily protein (.1) AT5G03730 412 / 4e-130 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G18160 374 / 8e-114 Protein kinase superfamily protein (.1) AT5G11850 370 / 2e-113 Protein kinase superfamily protein (.1) AT1G73660 369 / 6e-112 protein tyrosine kinase family protein (.1) AT1G08720 362 / 4e-110 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G49470 328 / 4e-102 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT4G23050 327 / 6e-99 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 318 / 2e-95 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 315 / 3e-94 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111200 [exp] 1535 / 0 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 635 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 628 / 0 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G025800 [exp] 524 / 1e-174 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.010G234700 [exp] 515 / 3e-170 AT5G03730 655 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.013G034800 [exp] 374 / 3e-114 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 375 / 1e-113 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 373 / 4e-113 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 371 / 4e-113 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042868 [exp] 1031 / 0 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1) Lus10028169 [exp] 882 / 0 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10023865 [exp] 630 / 0 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 622 / 0 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10034154 [exp] 483 / 7e-159 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10043428 [exp] 380 / 2e-117 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 375 / 1e-115 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 374 / 7e-114 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10000937 [exp] 365 / 5e-112 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 365 / 8e-112 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.005G153100.5 pacid=42803740 polypeptide=Potri.005G153100.5.p locus=Potri.005G153100 ID=Potri.005G153100.5.v4.1 annot-version=v4.1 ATGCCTCATCGTACCACTTACTTCTTCCCTAGGCAATTTCCTGAAAGGTCCGGGATCCATGCATCATCATCAAAACAAGCATTACATCACGAGAAGAAGA AAGTCAGTAAAGATGCTTTTAACATCGGAAATGACCGCCGAAAGTCTTCATCAAAAGATCAGTACTCCAAATCTTCCTTTCCAGTTGGCAAAAATATATC AGAAACAACAACTATTACTACTGTTCCAACTACAATAACAACACCCATATCCGATCTCTTCACGAGCAGTGATGACGAAAAGTACCATCCGAAGAACAAA CAATTCGGTGAGGATGACAAGTATAAACGAAAGAAAAAACAACTTGCCGCTTTTTTCGACTGGTTGTCCGAGAAAAAAGTTGAGAAATCTACTAGTCACG TGAAGTTGCAAAGATTATCAACTGAGGAGGATCGTCACCTGTTAGTTACACCGGAGCCGGAACCAGAACCAGAACCAGAACCTGTTCTTCCAGTTCCGCA GATAATTAAAGAGAGGGATGTTGACCGGAATTTTGACCGGCAAGTGTCGCTGCCAAGATTATCGAGTGGGAGTAGTTATGCTGGTAGCTTGTTCTCGGGG ATTACTACACTTTATGGAAACTTTACTACTGATATTAAGGTCGACACGTCGATGACGGTGCATTTGCCGACTATAAAGCAGGATGTGGCGGAGGAAAAGG AGGACCAGGAGAAGAAGGAAAACTTGGCGCTGAAGACTAAAGAGAGTTACTATTTGCAGCTTAGTTTGGCTAAAAGACTGAGCGCTCAAGCTGGTATTGC TAGTGAGCTTGTGCTTCTGCAGGAAGGCGTCCCTGAGGCCTCCGATGCACAAACCGTTTCGTATCGCCTCTGGGTGAGTGGATGCTTGTCGTACAGTGAC AAGATATCGGATGGATTTTATAACATTTTGGGAATGAATCCATATCTGTGGGTGATGTGCAATGACGATGAGGAAGTAAGCAAGCTGCCTCCTTTAAAGT CGCTCAAAGAAATTGAACCAAGTGAGACATCAATGGAGGTGGTCCTTGTTGATAGACGTGGTGACTCGCGTCTTAAGGAGCTGGAGGATAAAGCACAAGA ACTATATTGTGCTTCAGAGAATACATTGGTGTTGGTGGAGCAACTGGGCAAACTTGTTGCTATTTACATGGGGGGAACTTTCTCGGGGGAGCAAGGGGAT CTCCACAAGCGCTGGAAAGTGGTTAGCAGGAGATTGAGGGACTTCCACAATTGTATTGTGCTCCCCATTGGTAGCCTATCCATGGGACTCTGTAGACATC GCGCGATTCTATTCAAGAAATTGGCAGACTATATAGGTTTACCATGCCGGATAGCTCGAGGTTGCAAGTACTGTGTAGCGGATCACCAGTCTTCTTGCCT CGTCAAAATCCAGGATGACAGGCTGTTTTCAAGGGAATATGTAGTTGATCTAGTTGGGCAGCCAGGAAATGTCCATGGTCCAGATTCCACAATTAATGGA GCATTTCTTTCTTCAATGCCCTCACCATTTCAAATTCCACATCTAAATGAATCCCAACAACCTTACATGGATGATGCAACTTATGAGATTCTAGACTCAA AGCATTCATGTACTTTTCCTGAAAATCCTCCATGTTCAGGCAACAAGGAAGAAGAGAAACTGATAGAGGATGATGGTTGGTTTCAAAATCTGAAAGTCTC CACTTATGTGTCAGTGGATCAAGTGTACCCTGGGAATGAATCATCCCTGATGCCTTTGGATTTGAAAAGGAATGCTGAAGCCCCTGCAACTGCTGGACGA TCTATATATGAATGTTCTACACTTAAAGCAGAACAAATTATTATGCAACAAACTTACAAGAAAGAGATGGCTGTGTTTGGAAATTCAGTTATAAACAGTG TTGTCAAGCAAACTAAAGTAAACCTATCTAGTCAGTCTGGTATGGAGGAAGTTGAGAGTAGAGTAGACAATCAAGGTAGACCTTCTTCTGTGACCATCCC AAGATATTTGAATCTTGAACCTTCACTTGCCATGGATTGGCTTGAGATCTCATGGGAAGAATTACATATCAAGGAGCGTGTTGGTGCTGGCTCATTTGGT ACGGTGCATCGCGCTGAATGGCACGGATCGGATGTTGCTGTCAAGGTTCTAACTGTTCAAGATTTTCATGATGATCAGTTGAGGGAGTTCTTAAGAGAGG TGGCAATAATGAAACGAGTTCGCCATCCGAATGTGGTTCTCTACATGGGTGCTGTCACAAAGCATCCTCAACTATCAATCGTGACAGAATATCTGCCAAG GGGCAGTCTATACCGCCTCATACACAGGCCAGCTGCAGGTGAAGTGCTGGATCAAAGGAGGCGGTTACGTATAGCACTGGATGTGGCCAAGGGGATCAAT TATCTTCACTGTCTTAACCCTCCAATTGTTCACTGGGACCTTAAGTCTCCAAATTTGTTGGTTGATAAAAACTGGACGGTTAAGGTGTGTGATTTTGGGT TGTCTAGATTCAAAGCAAACACTTTTATATCATCAAAATCAGTGGCTGGAACACCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCCAATGA GAAGTCTGATGTTTACAGTTTTGGAGTTATCCTATGGGAGCTTGTGACCATGCAACAACCTTGGAGTGGACTTGGCCCCGCCCAGGTGGTTGGAGCTGTA GCCTTCCAGAATAGAAGGCTTTCTATTCCCCAGGAAGCGCCTCCAGTATTGGCTTCTCTCATGGAATCTTGCTGGGCTGATGATCCTGCTCAGCGCCCAT CTTTTGGTAAGATAGTAGAATCATTGAAGAAGTTGTTAAAGTCTCCGCTACAGGCGATAAAGATCAGTGTACAAAAGAGGTCTCCCATCACAGATACTTA A
AA sequence Show only first row Show all	>Potri.005G153100.5 pacid=42803740 polypeptide=Potri.005G153100.5.p locus=Potri.005G153100 ID=Potri.005G153100.5.v4.1 annot-version=v4.1 MPHRTTYFFPRQFPERSGIHASSSKQALHHEKKKVSKDAFNIGNDRRKSSSKDQYSKSSFPVGKNISETTTITTVPTTITTPISDLFTSSDDEKYHPKNK QFGEDDKYKRKKKQLAAFFDWLSEKKVEKSTSHVKLQRLSTEEDRHLLVTPEPEPEPEPEPVLPVPQIIKERDVDRNFDRQVSLPRLSSGSSYAGSLFSG ITTLYGNFTTDIKVDTSMTVHLPTIKQDVAEEKEDQEKKENLALKTKESYYLQLSLAKRLSAQAGIASELVLLQEGVPEASDAQTVSYRLWVSGCLSYSD KISDGFYNILGMNPYLWVMCNDDEEVSKLPPLKSLKEIEPSETSMEVVLVDRRGDSRLKELEDKAQELYCASENTLVLVEQLGKLVAIYMGGTFSGEQGD LHKRWKVVSRRLRDFHNCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHQSSCLVKIQDDRLFSREYVVDLVGQPGNVHGPDSTING AFLSSMPSPFQIPHLNESQQPYMDDATYEILDSKHSCTFPENPPCSGNKEEEKLIEDDGWFQNLKVSTYVSVDQVYPGNESSLMPLDLKRNAEAPATAGR SIYECSTLKAEQIIMQQTYKKEMAVFGNSVINSVVKQTKVNLSSQSGMEEVESRVDNQGRPSSVTIPRYLNLEPSLAMDWLEISWEELHIKERVGAGSFG TVHRAEWHGSDVAVKVLTVQDFHDDQLREFLREVAIMKRVRHPNVVLYMGAVTKHPQLSIVTEYLPRGSLYRLIHRPAAGEVLDQRRRLRIALDVAKGIN YLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAV AFQNRRLSIPQEAPPVLASLMESCWADDPAQRPSFGKIVESLKKLLKSPLQAIKISVQKRSPITDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24480			Protein kinase superfamily pro...		Potri.005G153100 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.001G007700 [exp]	2.82	0.8133
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.014G116900 [exp]	10.90	0.6987
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.006G028900 [exp]	16.12	0.7584
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.003G052150 [exp]	20.00	0.6298
AT4G22030			F-box family protein with a do...		Potri.011G007000 [exp]	24.18	0.6205
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033600 [exp]	35.28	0.7089	CHR946
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Potri.008G021766 [exp]	66.82	0.6633
AT3G58560			DNAse I-like superfamily prote...		Potri.016G061700 [exp]	73.70	0.6537
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.002G123700 [exp]	102.05	0.6353
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G009000 [exp]	236.90	0.5647

Compare expression of checked genes

Potri.005G153100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.