Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24500 61 / 2e-10 hydroxyproline-rich glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111500 [exp] 304 / 3e-102 AT4G24500 75 / 4e-15 hydroxyproline-rich glycoprotein family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004850 [exp] 53 / 1e-07 AT4G24500 52 / 2e-07 hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10020639 [exp] 50 / 7e-07 AT4G24500 51 / 3e-07 hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G153300.1 pacid=42803669 polypeptide=Potri.005G153300.1.p locus=Potri.005G153300 ID=Potri.005G153300.1.v4.1 annot-version=v4.1 ATGGAGGATTCAGAAAAAAGAAGGGAAAGATTGAAAGCAATGCGCTCAATAGCTGCTGCACAGGCTGAAACTTCTAATAACGTTGAAACTTCTGCTCCGC CAGGTTTGCTTGCTTATCCGCTTCTTGGGACCCCTGCAACTCTGCTGGCACAGGGGGAGTCCAGTGCGATTCCAAGGTTTGATTTTTATACAGACCCTTC AGCGGCATTTTCCGCAAACCGAAAGGGTGCTGCTGGTAACCAGGCTGCACGGGGTTATTTTACGTCTCCAAGCAATAATTCTTCTGTGCCTCAGTTATCG TCTCCCCATCCAGGTCAAAGGAACCTTGAAGTGACTCCCCCTCATGCTTATCAAATGCAAAACAGCTATCCACATGCGAATCAAATGCAAAGCAATCATT TACCCAACCAGAGAATGTATCGAGGGCAAGGTCCATATCACAATGCTGCTTCCTATAGAAGCCCGAGAGGTTTTTCGTGTCCTTTTCCCATGAATCAAGG AGCTCCTCCTGAAATGTGGAGTGGACCAGGTTTCCCAGCGAGCTATTTTAGCTCTACTGTTCACGGAGGACTGTCCAGTCCATATCCCATTTGTCAAGGG AATCCTGGCTTTGGGCCAGTAGGGAGCAGCCCGTCCCCTGTTTCAGGTTATGGAGGGAGTCCAGCTATTTCACAGACTGGCCAGGGGCACTGGCATAGCA GTTCAGGTTTTGGACAGAGTGGTGGAAGAGGACGAGGTTTTCATTCTCGTGGCTTTGCACCAAATGAAGCACAGGGGCCAGAATGTTTTTATGACAACTC GATGGTTGAAGATCCATGGCAGCATCTAGAACCTGTTTTGTGGAGTGGACTGGATGATTGGGGGAATAATTTGAATGGACCTGGCTCTTCAAATTCCTTG CTTCCAAAATCAATTAGCATGAAGAAATCAAGCGTTGCAGAGTCTTCTAACAAGTCCACTTCTGGAGTAAGCCTTGCAGAATACCTTGCTGCCTAA
AA sequence Show only first row Show all	>Potri.005G153300.1 pacid=42803669 polypeptide=Potri.005G153300.1.p locus=Potri.005G153300 ID=Potri.005G153300.1.v4.1 annot-version=v4.1 MEDSEKRRERLKAMRSIAAAQAETSNNVETSAPPGLLAYPLLGTPATLLAQGESSAIPRFDFYTDPSAAFSANRKGAAGNQAARGYFTSPSNNSSVPQLS SPHPGQRNLEVTPPHAYQMQNSYPHANQMQSNHLPNQRMYRGQGPYHNAASYRSPRGFSCPFPMNQGAPPEMWSGPGFPASYFSSTVHGGLSSPYPICQG NPGFGPVGSSPSPVSGYGGSPAISQTGQGHWHSSSGFGQSGGRGRGFHSRGFAPNEAQGPECFYDNSMVEDPWQHLEPVLWSGLDDWGNNLNGPGSSNSL LPKSISMKKSSVAESSNKSTSGVSLAEYLAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24500			hydroxyproline-rich glycoprote...		Potri.005G153300 [exp]	0	1
AT5G11480			P-loop containing nucleoside t...		Potri.018G037000 [exp]	1.41	0.9471
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.019G133101 [exp]	2.44	0.9194
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	4.89	0.9443	CRR2.1
AT5G17460			unknown protein		Potri.004G091600 [exp]	5.29	0.9179
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	8.48	0.9321
AT5G26110			Protein kinase superfamily pro...		Potri.005G212800 [exp]	11.70	0.8807
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.004G059400 [exp]	11.83	0.9241
AT5G24650			Mitochondrial import inner mem...		Potri.015G000600 [exp]	11.87	0.9010
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	12.00	0.9176
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.004G186500 [exp]	15.71	0.9140

Compare expression of checked genes

Potri.005G153300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.