Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24520 975 / 0 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 837 / 0 AR2, ATR2 P450 reductase 2 (.1.2) AT3G02280 253 / 6e-75 Flavodoxin family protein (.1) AT1G75200 76 / 4e-14 flavodoxin family protein / radical SAM domain-containing protein (.1) AT1G20020 71 / 7e-13 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT5G66190 66 / 1e-11 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT4G05390 65 / 4e-11 ATRFNR1 root FNR 1 (.1.2) AT1G30510 65 / 4e-11 ATRFNR2 root FNR 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G092100 [exp] 855 / 0 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.006G167200 [exp] 843 / 0 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.002G106632 [exp] 499 / 2e-174 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 498 / 5e-174 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 234 / 8e-68 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.005G112900 [exp] 68 / 8e-12 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 66 / 3e-11 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 65 / 8e-11 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.011G027100 [exp] 55 / 7e-09 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032842 [exp] 904 / 0 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10019996 [exp] 852 / 0 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 843 / 0 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 804 / 0 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 565 / 0 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 420 / 5e-143 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025484 [exp] 247 / 1e-76 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2) Lus10017589 [exp] 221 / 4e-63 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10033550 [exp] 66 / 1e-12 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10028451 [exp] 66 / 2e-11 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [poplar] [flax] Flavoprotein PF00258 [poplar] [flax] Flavodoxin_1 Flavodoxin CL0076 [poplar] [flax] FAD_Lum_binding PF00667 [poplar] [flax] FAD_binding_1 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G153800.1 pacid=42803344 polypeptide=Potri.005G153800.1.p locus=Potri.005G153800 ID=Potri.005G153800.1.v4.1 annot-version=v4.1 ATGAGTTCAGGTGGTTCAAATTTGGCGAGGTTCGTTCAATCAGTGCTAGGGATATCTTTTGGCGACTCCCTGTCTGACTCAGTTGTTGTGATAATTACCA CGTCGTTTGCTGCTCTAGTTGGATTGGTGGTGCTTGTATTGAAGAGATCGTCCGATCGGAGCAAAGACGTCAAGCCGTTGGTGGTTCCTAAGTCACTTTC AATTAAGGACGAGGAGGATGAGTCCGAGGCTCTGGGTGGGAAAACTAAGGTTACTATCTTTTATGGGACTCAGACCGGAACTGCGGAGGGTTTTGCTAAG GCTTTAGCTGAAGAGGTCAAAGCAAGATATGAGAAAGCAGCTGTTAAAGTGTTTGACCTGGATGATTATGCTATGGAAGATGATCAATATGAAGAAAAAT TGAAGAAAGAGACTTTGGCATTATTCATGGTTGCCACTTATGGAGATGGAGAGCCAACTGATAACGCTGCGAGATTTTATAAGTGGTTTACTGAGGGAAA TGAAAGGGGAATCTGGCTTCAACAGCTTTCTTATGGTGTTTTTGGTCTTGGTAACCGTCAATATGAACATTTTAATAAGATAGCGAAGGTGCTTGATGAC CTGCTCTATGAACAAGGAGGAAAGCGTCTCGTTCCTGTTGGTCTTGGCGACGATGATCAATGCATAGAGGATGATTTTTCTGCTTGGAAAGAATTTTTGT GGCCTGAGCTAGACCAGTTGCTCAGAGATGAAGATGATGTGAATGCTCCATCTACTCCTTATACAGCTGCTATACCTGAATATCGATTAGTGATTCATGA TCCTTCTATAATATCTGTTGAGGATAAATTCTCAAACTTGGCAAATGGGAATGTGTCTTTTGATATTCACCATCCATGCAGAGTCAATGTTGCTGTCCAA AAAGAGCTTCACAAAGCAGAGTCTGACCGGTCTTGCATACATCTGGAATTTGACATCACAGGGACTGGAATTACATATGAAACTGGAGACCATTTGGGGG TGTATGCTGAGAATAGTGATGAAACTGTTGAAGAAGCAGGGAAGTTGCTAGATAAACCTTTAGATTTGTTGTTTTCTATTCATGCTGATAATGAGGATGG CACAGCTATTGGAAGCTCATTGCCGCCTCCTTTCCCAGGTCCCTGCACACTTCACACTGCATTGGCATGCTATGCAGATCTCTTGAGCCCTCCTAAAAAG GCTGCTTTGCTTGCTTTGGCTGCTCATGCCAGTGAACCTAGCGAGGCAGATAGACTCAAGTTTTTATCATCACCGCAAGGAAAGAATGAATACTCTCACT GGGTCATGGCAAGTCAGAGAAGTCTTCTCGAGGTAATGGCTGAGTTCCCATCTTCGAAACCTCCCCTTGGTATCTTTTTTGCTGCAGTGGCTCCTCGCCT ACAGCCTCGCTACTATTCTATCTCATCCTCTCCTAGATATACTCCCAATAGAGTACATGTGACCTGTGCTTTAGTATATGGTCCAACTCCCACTGGTAGA ATTCACAAAGGGGTGTGTTCAACTTGGATGAAGAATGCAGTTCCTCTGGAGAAAAGTTATGAATGTAGTTGGGCTCCCATTTTCACCAGAACATCTAATT TCAAGTTACCAGCAGATCCTTCAACTCCAATTATAATGGTGGGTCCTGGTACTGGATTGGCACCTTTCAGAGGATTTTTACAGGAAAGAATAGCCCTGAA AGAGGATGGTGTGAAGCTTGGTCCCGCCCTGCTTTTCTTTGGATGCAGAAATCGCCGAATGGATTTCATATATGAGGATGAGCTCAATAATTTTGTCGAG CAAGGTGTGATATCCGAGTTGATAGTTGCATTCTCAAGGGAGGGGCCACAGAAGGAATATGTTCAACATAAGATGGTGGATAGAGCAGCAGAGATATGGA CTATAATTTCTCAAGGAGGTTATTTTTACGTGTGCGGTGATGCCAAGGGTATGGCTAGAGATGTTCATAGGACTCTGCACACTATTGTGCAAGAGCAGGG AGGCCTGGACTCGTCGAAAACCGAGTCTATGGTGAAGAAGCTCCAAATGGAAGGACGGTATCTAAGAGATGTCTGGTGA
AA sequence Show only first row Show all	>Potri.005G153800.1 pacid=42803344 polypeptide=Potri.005G153800.1.p locus=Potri.005G153800 ID=Potri.005G153800.1.v4.1 annot-version=v4.1 MSSGGSNLARFVQSVLGISFGDSLSDSVVVIITTSFAALVGLVVLVLKRSSDRSKDVKPLVVPKSLSIKDEEDESEALGGKTKVTIFYGTQTGTAEGFAK ALAEEVKARYEKAAVKVFDLDDYAMEDDQYEEKLKKETLALFMVATYGDGEPTDNAARFYKWFTEGNERGIWLQQLSYGVFGLGNRQYEHFNKIAKVLDD LLYEQGGKRLVPVGLGDDDQCIEDDFSAWKEFLWPELDQLLRDEDDVNAPSTPYTAAIPEYRLVIHDPSIISVEDKFSNLANGNVSFDIHHPCRVNVAVQ KELHKAESDRSCIHLEFDITGTGITYETGDHLGVYAENSDETVEEAGKLLDKPLDLLFSIHADNEDGTAIGSSLPPPFPGPCTLHTALACYADLLSPPKK AALLALAAHASEPSEADRLKFLSSPQGKNEYSHWVMASQRSLLEVMAEFPSSKPPLGIFFAAVAPRLQPRYYSISSSPRYTPNRVHVTCALVYGPTPTGR IHKGVCSTWMKNAVPLEKSYECSWAPIFTRTSNFKLPADPSTPIIMVGPGTGLAPFRGFLQERIALKEDGVKLGPALLFFGCRNRRMDFIYEDELNNFVE QGVISELIVAFSREGPQKEYVQHKMVDRAAEIWTIISQGGYFYVCGDAKGMARDVHRTLHTIVQEQGGLDSSKTESMVKKLQMEGRYLRDVW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	2.44	0.7399
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.004G061500 [exp]	2.82	0.7346
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145548 [exp]	3.46	0.7164
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.001G206900 [exp]	10.81	0.6894
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	11.22	0.6981
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.010G087900 [exp]	12.00	0.6820
AT3G46450			SEC14 cytosolic factor family ...		Potri.009G028700 [exp]	25.09	0.6342
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	26.90	0.7127
AT1G05870			Protein of unknown function (D...		Potri.017G032800 [exp]	33.40	0.6793
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074700 [exp]	36.78	0.6627

Compare expression of checked genes

Potri.005G153800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.