Plant FIBer expression Database

Potri.005G154000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G58200 734 / 0 MSL3 MSCS-like 3 (.1.2)
AT5G10490 712 / 0 MSL2 MSCS-like 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G105900
[exp]
1143 / 0 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2)
Potri.007G011100
[exp]
779 / 0 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3)
Potri.005G107200
[exp]
62 / 6e-12 AT5G10490 77 / 2e-18 MSCS-like 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009277
[exp]
773 / 0 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2)
Lus10002652
[exp]
704 / 0 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3)
Lus10012733
[exp]
555 / 0 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00924 MS_channel Mechanosensitive ion channel
Representative CDS sequence
>Potri.005G154000.1 pacid=42802703 polypeptide=Potri.005G154000.1.p locus=Potri.005G154000 ID=Potri.005G154000.1.v4.1 annot-version=v4.1
ATGATTCGTGTTAGTTCTATACAATTTTCTCATGAGTTAAGGGTTCACAATAGTCATGGATGCAGTAATCAACACAATAGTGCAATCAGAAAGAGCAGAG
TGCAGTTGATTAATGTCAATCTTTCTTCTCAATTTCTGCGACAGGATCCTTGGAGTCTCCATCTTCAAAACTGCATAAATAGGTCACTTAGTCCTGTACC
TTCCAGATGTATTGTGTTCCTTTGCCGATCTGTTCTAACACCAGGTGAAGGAAATGGGATTCCTGTTCTGAAATCTGCAGCCATGGCCTTGACAAGGTCC
TATGATGCTCTTTGTGGAACTACTCTGGTGCTTAAATTGATTCCGGCAGTTTGTATCATTGCTTTTGCTGCATGGGGTCTTGACCCTCTAATGTGTTTGG
GGAGGGCTGTATTTCTCCATAAATCTGATAGTAGTTGGAAGAAGAGTAGAACGTATTTGGTCATGACTTCTTATCTTCAACCTTTGCTGCTCTGGACTGG
AGCAATGCTCATCTGCAGAGCTCTAGATGTAGTAGTTCTACCATCAGAAGCAAGCCAAGCTGTGAAACTACGACTTCTAAATTTTGTACGTTCGTTATCA
ACCGTTATGGCATTTGCTTATTGTTTGTCCAGCTTGATTCAACAGGCACAAAAATTCTTCACAGAGACAAATGACTCCAGTGATGCTAGAAATATGGGCT
TTAGTTTTGCTGGAAAAGCTGTTTATTCTGCAGTCTGGATTGCTGCTGTGTCACTGTTCATGGAATTGCTAGGCTTCTCTACACAAAAGTGGCTAACAGC
TGGAGGCCTTGGTACAGTGTTGCTCACCCTTGCTGGCCGAGAGATATTTACAAATTTCCTTTCAAGTGTAATGATCCATGCAACACGGCCATTTGTTTTG
AATGAATGGATTCAGACAAAAATTGAAGGCTATGAAGTTTCTGGTACTGTTGAGCATGTGGGCTGGTGGTCTCCAACAATTATAAGAGGTGATGATCGCG
AAGCTGTTCACATTCCAAACCACAAGTTCAATGTGAGTGTTGTGAGAAATCTTAGCCAGAAGACTCATTGGCGCATCAAGACCCACTTTGCCATCAGTCA
CTTGGATGTCATTAAAATTAATAATATTGTAGCTGATATGCGTAAAGTTTTGGCAAAAAATCCACAAATTGAGCAGCAAAGGTTGCACAGAAGAGTTTTC
CTGGATAATATCAATCCAGAGAATCAGGCTCTTATGATTTTGGTATCATGCTTTGTGAAAACCTCACATTTTGAAGAGTACTTATGCGTAAAGGAAGCAG
TACTCTTGGATCTTCTTAGAGTAATTAGCCATCATCGTGCTCGGCTTGCCACACCCATTCGTACAGTACAGAAAATATACGGCGAGGCTGATTTGGAGAA
TGTGCCATTTTCCGACTCTATTTTCACACGTTCTGGAGCTACCGCTAGCCGTCCATTATTGTTAATTGAGCCCTTTTATAAAATTAATGGCGAAGATAAA
GTTAAAGCTTCACATCGTCCACTTCATGCTAATGAGGAAAAAGATGCAAAGGTTGAAGCAGCTCTGGTATCTGAATTCAAAGCAGATACCAAGGCAGGAT
CAACGCCAATTGTTGACTCGAAAAGAGAGAAGGTGATCACAAAATCTACTTCCAACTCCAGCACAAATTCTAGAGTCTCAGCTGTCTTGGCATCCGATCC
TCAACTTATCAGTTCAATGCCTGATAATTCAGTTCAAAACAATTCTGGAGCACAGCAGTCTAATGGAAGTATGGGAGATGGATGGAAGGAGACAATGGGG
CAAAATTCTGAAGGCACAACCTCCAAGGGAGCAACACCTGAGAGGTCTTCAGTTGCTGCTGACCCAGAATCTGGAATTGAAAGAACTGAGAGTCCTGTCA
TTTCACAGGTCAAGCAAGATATTGAGAGATCTGTTGCATCACCATCAGTGACCAGGCCTTCTTTGGAGGAGAACCTTGTTCTCGGTGTTGCTCTGGAGGG
CTCAAAACGAACTCTTCCAATTGAGGAAGAAATGGATCCATCTCCTTTCCCTATAGAATCGAAGGAATTGGCTGCCTGCCGAAATGGAGGAGCTCCTCCT
GGCAAGGATAAAAAGGACAGCCAGGACAATTCCTAG
AA sequence
>Potri.005G154000.1 pacid=42802703 polypeptide=Potri.005G154000.1.p locus=Potri.005G154000 ID=Potri.005G154000.1.v4.1 annot-version=v4.1
MIRVSSIQFSHELRVHNSHGCSNQHNSAIRKSRVQLINVNLSSQFLRQDPWSLHLQNCINRSLSPVPSRCIVFLCRSVLTPGEGNGIPVLKSAAMALTRS
YDALCGTTLVLKLIPAVCIIAFAAWGLDPLMCLGRAVFLHKSDSSWKKSRTYLVMTSYLQPLLLWTGAMLICRALDVVVLPSEASQAVKLRLLNFVRSLS
TVMAFAYCLSSLIQQAQKFFTETNDSSDARNMGFSFAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVL
NEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFNVSVVRNLSQKTHWRIKTHFAISHLDVIKINNIVADMRKVLAKNPQIEQQRLHRRVF
LDNINPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSDSIFTRSGATASRPLLLIEPFYKINGEDK
VKASHRPLHANEEKDAKVEAALVSEFKADTKAGSTPIVDSKREKVITKSTSNSSTNSRVSAVLASDPQLISSMPDNSVQNNSGAQQSNGSMGDGWKETMG
QNSEGTTSKGATPERSSVAADPESGIERTESPVISQVKQDIERSVASPSVTRPSLEENLVLGVALEGSKRTLPIEEEMDPSPFPIESKELAACRNGGAPP
GKDKKDSQDNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G58200 MSL3 MSCS-like 3 (.1.2) Potri.005G154000
[exp]
0 1
AT3G62910 APG3 ALBINO AND PALE GREEN, Peptide... Potri.014G133400
[exp]
8.30 0.8273 APG3.1
AT4G19830 FKBP-like peptidyl-prolyl cis-... Potri.012G119800
[exp]
11.00 0.8390
Potri.017G095500
[exp]
11.57 0.8335
AT4G37480 Chaperone DnaJ-domain superfam... Potri.007G052400
[exp]
12.04 0.7453
AT2G25840 OVA4 ovule abortion 4, Nucleotidyly... Potri.003G158000
[exp]
12.40 0.8162
AT1G27170 transmembrane receptors;ATP bi... Potri.015G043600
[exp]
14.14 0.7792
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
26.17 0.7468
AT1G11340 S-locus lectin protein kinase ... Potri.011G036600
[exp]
28.28 0.7339
AT1G53250 unknown protein Potri.011G112300
[exp]
36.46 0.8231
AT5G52110 CCB2, HCF208 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.015G138400
[exp]
38.01 0.8091

Potri.005G154000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.