Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00020 603 / 0 ATCG00020.1, PSBA photosystem II reaction center protein A (.1) ATCG00270 127 / 7e-34 ATCG00270.1, PSBD photosystem II reaction center protein D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G138300 [exp] 605 / 0 ATCG00020 684 / 0.0 photosystem II reaction center protein A (.1) Potri.013G142201 [exp] 69 / 2e-13 ATCG00270 410 / 1e-145 photosystem II reaction center protein D (.1) Potri.008G207200 [exp] 52 / 1e-07 ATCG00270 434 / 1e-154 photosystem II reaction center protein D (.1) Potri.019G047540 [exp] 39 / 0.0002 ATCG00270 105 / 2e-29 photosystem II reaction center protein D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004895 [exp] 602 / 0 ATCG00020 713 / 0.0 photosystem II reaction center protein A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00124 [poplar] [flax] Photo_RC Photosynthetic reaction centre protein
Representative CDS sequence Show only first row Show all	>Potri.005G154836.1 pacid=42803164 polypeptide=Potri.005G154836.1.p locus=Potri.005G154836 ID=Potri.005G154836.1.v4.1 annot-version=v4.1 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGAT CTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATTCATTGA TGAATGGTTATATAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCGT CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGG ATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT TACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATAGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCT CTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAA CCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT CATAATTTCCCTCTAGACCTAGCTGCTGTTGAAGTTCCATCTACAAATGGATAA
AA sequence Show only first row Show all	>Potri.005G154836.1 pacid=42803164 polypeptide=Potri.005G154836.1.p locus=Potri.005G154836 ID=Potri.005G154836.1.v4.1 annot-version=v4.1 MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAAFIDEWLYNGGPYELIVLHFLLGVACYMGREWELSFR LGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEG YRFGQEEETYNIVAAHSYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNA HNFPLDLAAVEVPSTNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00020		ATCG00020.1, PS...	photosystem II reaction center...		Potri.005G154836 [exp]	0	1
ATCG00020		ATCG00020.1, PS...	photosystem II reaction center...		Potri.013G138300 [exp]	2.82	0.8923
ATCG01060		ATCG01060.1, PS...	iron-sulfur cluster binding;el...		Potri.019G014344 [exp]	9.38	0.8301
ATCG00330		ATCG00330.1, RP...	chloroplast ribosomal protein ...		Potri.013G142336 [exp]	14.69	0.8209
ATCG00270		ATCG00270.1, PS...	photosystem II reaction center...		Potri.013G142201 [exp]	18.46	0.8000
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.019G028351 [exp]	22.75	0.7884
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Potri.011G074868 [exp]	23.36	0.8077
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.011G113800 [exp]	23.66	0.7865
ATCG00300		ATCG00300.1, YC...	YCF9 (.1)		Potri.013G142548 [exp]	26.07	0.7638
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G113784 [exp]	29.24	0.7872
ATCG00720		ATCG00720.1, PE...	photosynthetic electron transf...		Potri.011G074700 [exp]	31.67	0.7821

Compare expression of checked genes

Potri.005G154836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.