Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 454 / 1e-148 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 441 / 6e-145 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 443 / 2e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 432 / 2e-140 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G18750 434 / 5e-140 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 428 / 2e-139 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 426 / 6e-139 MEF22 mitochondrial editing factor 22 (.1) AT2G27610 427 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 423 / 2e-137 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 424 / 2e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G151200 [exp] 1555 / 0 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 487 / 2e-159 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 466 / 4e-150 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 463 / 1e-149 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 451 / 3e-147 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 457 / 9e-147 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 449 / 1e-145 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 448 / 2e-145 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 443 / 2e-145 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042924 [exp] 835 / 0 AT1G11290 397 / 1e-126 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 471 / 4e-152 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 463 / 3e-150 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 457 / 5e-148 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 448 / 7e-146 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 444 / 2e-144 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 440 / 7e-143 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 434 / 3e-142 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 442 / 2e-139 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 429 / 5e-139 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G155000.2 pacid=42804184 polypeptide=Potri.005G155000.2.p locus=Potri.005G155000 ID=Potri.005G155000.2.v4.1 annot-version=v4.1 ATGGCTTCTTTGCCCTCTGTTGCTATCACTGGCACTCTCAGGCTTGGAACTGAACTCAAAAGGCACCCCTCTGCCACCGAAAAGACTTCTAACATTTCGT ATCAGAGGAGTTCTATAAATACCCAATCGGATGCAAATCTTGAACCATTCAAGCCTCTGGAGTTTCACGAAGCGCTTTCATTGATAAAAGAGGGCGAACA AGTTGAGTCCTCTTATTATGTTCCTCTTTTGCAACATTGCATAGACAAGGTTTCGGTCCCAGAGACTGAAATGGTTCATGCTCACGTGATAAAGACTGGA ACCCATGAAGAGTTTTTTGTGATGTCATTTCTAGTCAATGTTTATGCAAAATGCGGGGTTATGGTAAATGCTAGAAAAGTTTTTGATAATTTGCCTAGAA GAAATGTAGTCGTGTGGACAACTTTGATGACAGGTTATGTTCAAAATTCACAACCTGAGGTAGCTGTTGAGGTTTTTGGAGACATGTTAGAATCTGGGTC ATTTCCTTCAAATTTCACTCTGTCAATTGCTTTGAATGCTTGTTCTTCTCTGGAGTCTATCACATTGGGGAAACAGTTCCATGCCTTCATTATTAAGTAC CGGATCAGTCACGACTCCAGTATTGGAAATGCTCTCTGTAGTTTGTACTCGAAATTTGGCAGCTTGGACTCTTCGGTTAAAGCTTTTCGTGAGACTGGAG AAAAGGATGTAATTTCCTGGACGACGATTATATCTGCTTGTGGTGACAATGGCAGAGCAGGAATGGGTTTAAGACTTTTCATTGAAATGCTTTTTGAGAA TGTTGAGCCTAATGACTTCACACTAACAAGCGTGTTGAGCTTGTGCAGCACAATACAGTCTTCGGATCTGGGGATGCAGGTTCACTCATTGAGCACTAAA CTTGGCCATGAATCAAACCTGCGCATCACAAATTCTCTTGTTTACTTGTACCTTAAATGTGGATGCATTGATGAGGCGAAGAATTTGTTTAATAGAATGG AATATAAGAACTTGATTACGTGGAATGCAATGATTGCAGGTCATGCTCAAGCAATGGATCTTGCGAAAGACAATTTTTCAGCACAGCAAACTGGAACTGA GGCACTCGGCATGTATTTGAAGTTGAATCGCTCTGGCAGGAAACCTGATCTATTCACCTTGTCAAGTATCCTAACTGTATGCAGTAGGCTGGCAGCCTTA GAGCAGGGGGAACAAATACATGCCCAGACTATTAAATCAGGGTTTTTATCAGATGTAGTTGTTGGAACTGCACTTGTGGATATGTACGACAAGTGTGGAA GTATTGAGAGGGCAAGAAAAGCTTTTCTGGATATGTCTACAAGAACATTGATATCTTGGACCAGCATGATTACAAGTTTTGCACGGCATGGCCAGTCTCA GCATGCACTGCAGCTTTTTGAAGACATGAGGCTAGCTGGATTCAGGCCAAACCAGATCACTTTTGTGGGCGTTCTGGCTGCATGTAGCCATGCTGGAATG GTCGATGAAGCACTTGAGTATTTTGAAATAATGCAAAAGGAATACAAAATTAAGCCAGTAATGGACCATTATGGATGCTTGGTTGACATGTTTGTGAGGC TGGGTAGACTAGATGAAGCTTTTGATGTCATCAAGAGAATGGATGTAGAACCAAACGAGTTTATATGGTTGCTCTTGATTGCTGGGTGTAGAAATCATGG GAATGAAGAACTAGGGTTTTATGCTGCTGAACAGTTACTCAAACTCAAGCCCAGAAGCACTGAGACTTATGTCGTGTTGTTAAATATGTACATCTCTGCA GAGAGGTGGGAGGATGTTTCTATGGTGAGAAGATTGATGAAAGAGGAGAAAGTCGGAAAGTTAAAGGACTGGAGTAGGATCAGCATTAAGGGAGAGGTTC ATTCATTCAAAACAAATAACCGGTTGCATAACCATAATGCAGAGCTGCATACACTATTGAATGATTTGGTTGACAGAGCAAAGAGTCTCGGGTACGAGCA GTTAGAGAATATGGAGGTAATTGATGATGAGGAAGAGGAAGCCGAAGAGAAGGCATTCTCTTCTGCTGTTTACCACAGTGAGAAGTTGGCAGTAACATTT GGGTTATTGAATACGCCCATTGGTGCACCAATTAGGGTCATCAAGAGTGTCACTATGTGCAAGGATTGCCATGATTTTATGAAGGTTGTCTCATCACAGA CCACCAGACATATCATCATTAAAGATGGGAAGCGGCTTCATAAGTTTGTTAATGGACAATGTTCATGTGCAGATTCCCATGGTCTTCTTTGA
AA sequence Show only first row Show all	>Potri.005G155000.2 pacid=42804184 polypeptide=Potri.005G155000.2.p locus=Potri.005G155000 ID=Potri.005G155000.2.v4.1 annot-version=v4.1 MASLPSVAITGTLRLGTELKRHPSATEKTSNISYQRSSINTQSDANLEPFKPLEFHEALSLIKEGEQVESSYYVPLLQHCIDKVSVPETEMVHAHVIKTG THEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKY RISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTK LGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAAL EQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGM VDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISA ERWEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVIDDEEEEAEEKAFSSAVYHSEKLAVTF GLLNTPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKRLHKFVNGQCSCADSHGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G155000 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G151200 [exp]	1.00	0.9973
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.003G015200 [exp]	2.44	0.9543	Pt-PETF.4
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.007G134600 [exp]	6.32	0.9387
AT1G31920			Tetratricopeptide repeat (TPR)...		Potri.001G135400 [exp]	6.48	0.9444
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.008G153200 [exp]	8.00	0.9443
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.014G066700 [exp]	9.74	0.9390	Pt-AFO.1
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	11.22	0.9296
AT4G13590			Uncharacterized protein family...		Potri.001G053600 [exp]	12.00	0.9252
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.019G019300 [exp]	13.19	0.9156
AT5G42765			unknown protein		Potri.014G196800 [exp]	13.63	0.9388

Compare expression of checked genes

Potri.005G155000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.