Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22540 234 / 5e-78 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT4G24540 218 / 6e-72 MADS AGL24 AGAMOUS-like 24 (.1) AT3G57230 125 / 2e-35 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 116 / 7e-32 MADS AGL21 AGAMOUS-like 21 (.1) AT3G57390 115 / 4e-31 MADS AGL18 AGAMOUS-like 18 (.1.2) AT2G14210 112 / 3e-30 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT2G03710 110 / 4e-30 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G13790 109 / 8e-29 MADS AGL15 AGAMOUS-like 15 (.1) AT2G22630 108 / 1e-28 MADS AGL17 AGAMOUS-like 17 (.1) AT5G51870 105 / 3e-28 MADS AGL71 AGAMOUS-like 71 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105600 [exp] 351 / 3e-124 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G010800 [exp] 247 / 3e-83 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044200 [exp] 206 / 5e-67 AT2G22540 206 / 9e-67 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044500 [exp] 201 / 3e-65 AT2G22540 201 / 4e-65 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115200 [exp] 193 / 5e-62 AT2G22540 189 / 3e-60 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115000 [exp] 187 / 1e-59 AT2G22540 181 / 9e-57 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115100 [exp] 183 / 7e-58 AT2G22540 186 / 1e-58 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G150501 [exp] 135 / 1e-38 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G109601 [exp] 133 / 1e-38 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025719 [exp] 213 / 2e-70 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10035942 [exp] 213 / 7e-68 AT2G22540 307 / 1e-104 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005325 [exp] 116 / 2e-31 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10039580 [exp] 116 / 2e-31 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10007100 [exp] 110 / 8e-30 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10020477 [exp] 107 / 2e-29 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10004638 [exp] 105 / 8e-28 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10005080 [exp] 106 / 1e-27 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10006715 [exp] 105 / 2e-27 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10034371 [exp] 104 / 7e-27 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.005G155300.4 pacid=42803829 polypeptide=Potri.005G155300.4.p locus=Potri.005G155300 ID=Potri.005G155300.4.v4.1 annot-version=v4.1 ATGGCGAGAGAGAAGATCAAGATCAAGAAGATTGACAACGTGGCTGCAAGACAAGTGACCTTCTCAAAGAGGAGGCGAGGACTTCTCAAGAAAGCTGAAG AGCTTTCTGTTCTTTGTGATGTTGAGGTTGCTGTCATCATTTTTTCTGCTACTGGCAAGCTCTTTGAGTATTCCAGCTCCAGTATGAAGGACGTTCTTGC GAGGTATAATTTGCACTCCAATAACCTCGACAAACTAAACCAACCATCTCTTGAGTTGCAGCTAGAAAACAGCAATCATATGCGATTGAGAAAGGAGGTT TCTGAAAAGAGCCATCAACTAAGGCGAATGAGAGGAGAAGAGCTTCAAGGACTAAATATAGAGGAATTGCAGCAATTGGAAAAAGTGCTTGAAGTAGGAC TTTGTTGTGTGCTTGAAACCAAGGGAGAACGAATTATGAATGAGATATCTACACTTGAAAGGAAGGGAGCTCAGCTTTTGGAAGAGAATAAGCATTTAAA ACAGAAAATGACAACCATTTGTAAGGGAAAGAGACCTGCCCTTGTTGATTTAGACACAGCAGTTCAGGAAGAAAGGATGTCATCGGAGTCTACTAGCAAT GTTTGCTGCAGCAGCAGTGGCCCTCCTGTAGAGGATGATAGCTCCGACACCTCTCTCAAATTAGGGTTGGCCATCTTAAGCTGA
AA sequence Show only first row Show all	>Potri.005G155300.4 pacid=42803829 polypeptide=Potri.005G155300.4.p locus=Potri.005G155300 ID=Potri.005G155300.4.v4.1 annot-version=v4.1 MAREKIKIKKIDNVAARQVTFSKRRRGLLKKAEELSVLCDVEVAVIIFSATGKLFEYSSSSMKDVLARYNLHSNNLDKLNQPSLELQLENSNHMRLRKEV SEKSHQLRRMRGEELQGLNIEELQQLEKVLEVGLCCVLETKGERIMNEISTLERKGAQLLEENKHLKQKMTTICKGKRPALVDLDTAVQEERMSSESTSN VCCSSSGPPVEDDSSDTSLKLGLAILS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.005G155300 [exp]	0	1
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.006G086500 [exp]	6.78	0.8413
AT3G57710			Protein kinase superfamily pro...		Potri.005G068000 [exp]	10.19	0.8125
AT1G61670			Lung seven transmembrane recep...		Potri.006G109000 [exp]	10.19	0.8304
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.014G123000 [exp]	12.00	0.8251
AT4G37020			unknown protein		Potri.007G043200 [exp]	12.48	0.8365
AT3G60210			GroES-like family protein (.1)		Potri.002G135700 [exp]	17.34	0.7642
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.002G105600 [exp]	18.33	0.7758
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046600 [exp]	19.05	0.7717
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	20.24	0.8186
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243500 [exp]	28.35	0.8154	Pt-EU3.2

Compare expression of checked genes

Potri.005G155300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.