Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09730 552 / 0 Cysteine proteinases superfamily protein (.1.2) AT4G33620 308 / 2e-91 Cysteine proteinases superfamily protein (.1) AT1G10570 129 / 6e-31 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G60220 125 / 2e-29 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT4G15880 80 / 3e-15 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G06910 75 / 1e-13 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1) AT4G00690 67 / 2e-11 ULP1B UB-like protease 1B (.1) AT3G48480 58 / 1e-08 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105700 [exp] 1352 / 0 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 416 / 8e-131 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 405 / 2e-125 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.010G040600 [exp] 129 / 5e-31 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.010G180300 [exp] 70 / 1e-12 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.015G090800 [exp] 66 / 3e-11 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.008G221500 [exp] 61 / 2e-09 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G013700 [exp] 56 / 1e-07 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000917 [exp] 620 / 0 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10020445 [exp] 349 / 2e-106 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10030867 [exp] 111 / 2e-25 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030622 [exp] 108 / 4e-24 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10023104 [exp] 70 / 5e-12 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 64 / 3e-10 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10035097 [exp] 50 / 2e-06 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.005G155600.6 pacid=42803842 polypeptide=Potri.005G155600.6.p locus=Potri.005G155600 ID=Potri.005G155600.6.v4.1 annot-version=v4.1 ATGAAGAACTATTTCAATGAAGAAGAAGACGAGATAGCTGAATTAGCAGCTGGTCAATTATTAGTCACCCAGGAATGTGATATTCCTAAAAACGAAACCT CTAGTTTAGTTTGTGTAGATGCTGATGCTATTGACTGTGATAATGCTTCTACTCGTGTTCGGCCCCGAACTGTTGGAGAGGACTTAAACACTGAAGAAGG AAATTCTGCTGCTCCCCATTTAACTTCTTTAAGTCATGAACACGACCCTTGTTTTCCGGTAGATGGTTTTGATTCGAAAATGATTTTTAGTGAACACGTG ACAAGAATTTCATGCCATGAAGCTCCTTTACTTGGGGAAAGCCAATTAAACTGTGGTCTTAGAGATGGTCCTCCGTCCAGTGCTGAGCTTGTTGATGAAC ACATGGAGGAGTGTTCTCCATCAAGCCCCACTCCTGATATTGCAGATGCTGGTGTTATTTTAAATGACCTCACACCAACCAATTGTTTCAGCTACTCAGA AATGAGTGACATTGGTATTGTTGTTGATTATGTTGTATACCGGGGTAAATATTGTACTGGGTGTCTGGTGACATTTTCTTACAGTGGCATTAAAATTAAT GGTACAACTGCTCATGGAGATGAAGGAACCTTTAGCTTCGAAACAGGAATTGATGAAATTGTTAGTATTGAGTCTCAGAATATTCAAAGATTTGAAACTG TAATGATTAAGCTTCACATACTTTCAAAGGATGCAGTACAAGCTGATAACACACAAGGCATGTCAGGTGTTGAGGAGTTGGAGGTTGTGGTTGTTGAGCC AAATTGGTCTAGGAAATGGGAAGAGATTACATCTCTGAATGTGAAGTACTCACCTCTACTGAGCGTTATACATGACATGGATATTGCAATGAATGGAGTA GACTCACTTCAACAGAGGCGCTATTTCCCCAGTTTTGATTCAGAGTTTGAAGATGTTATCTATCCAAAAGAGGACTCGGATGCAGTTTCTATTAGTAAGA GAGATGTTGATCTATTACAACCAGAGACTTTCATCAATGATACAATCATTGACTTTTACATTAAGTATTTGAAGAATCAGATTCCATCGGAGGAGAAGCA AAGATACCATTTTTTCAATAGCTTTTTCTTTAGGAAGCTTGCTGATCTTGACAAAGATCCATCCAATGTGAAAGATGGCAAAGCTGCTTTTTTACGTGTC CATAAATGGACCAGAAAAGTGGATTTGTTTGGAAAAGACTACATTTTCATTCCTGTAAACTTCAATCTTCACTGGAGTTTATTAGTAATATGCCATCCGG GTGAAATAGCTGGTGTGAAAGATGAAGACACAGAAATATCTGTCAAAGTACCATGTATATTGCACATGGATCCTATCAAAGGAACTCATGCAGGTCTCAA AAATCTTGTTCAAAGTTATTTATGGGAAGAGTGGAAAGAGAGGCAGAAGGGCTCATCTGAAGACATGTCTTCAAAATTCTTGAATTTGCGGTTTGTCCCA CTTGAGCTGCCACAGCAGGAAAATTCATTTGATTGTGGCCTGTTCCTGCTTCACTATCTGGAGCTCTTTTTGGTAGAGGCCCCAGTGAATTTTAGCCCAT TCAGAATAAATGGGTTTACTAAGTTTCTTAATGGGGATTGGTTTCCTCCTGCTGAAGCTTCTCTCAAGCGTACACTTATCCAGAGGCTAATCTCTGAGCT GCTTCAAAATTGTTCTCGGGAAGTTTCTTCTAGTGGTTGCAGCAGTGAACAACAGTCTAATTTCCCTGAAATTAATGGGAAAGAATCTGGATTGGAGCTT GTTTCAGACAGATACTCTCCTGATGGAGCTTGTCGTGTTAATTTATCAAGCTCTGACCATGGTCAGGGCATTGAAATTACTCTATTGGGAGTATCACCTA TGAGGAATTCTCATTGTGTTAATGATCCTGGCTTGGTTCTCAGGGAATTTTTTGATCCGGAAGTTGCTGCTGGATCATTACTTGCACAGTGTCCATCCTT TGACCAGCCATCGTCTTATCACCACCTTAATGGTACTAGGTCACAGATAGAGCAGGATGATACCGAAACTGGTGAGCAGTTTGTGTATTTCCCTTCTGGA GAAACTGTTTGTCAGAAAGTTGCAGGAATAACACCTCAAGATGGTTCTATATCATGTTCTTTTAAAGCTTTTGGAGCTGATGATTCTTGGAATCCAGGGA TTTCTTTGCAAGCAGATGACAATGATTCATCTTCAGAAACATCAGACTGTGCCTCTGATGATTCAGATGTAGGAATCATTGAAAATTTTCCAGCTATGGA AGATGCAGGTATTTGTCAGAAGGAGAAATTTGATCAACGAAAATCTCCTTTGATGGAAAATGTAGGGTGTTTGACCGTAAGCCTTGCTTCTGCCTCTGGC GAGATGCTTGAGAATTCTGCCTTTGGAGGTATACGGAACCTTAGAAGTACTGAGGACATTGACAAGATTCATGATGGCAATGAGCATGTTAGCCTTGCAT CTTGTCAGGGAAATTTCTCAGCATCACTGCAAGAAGACCCCAACTTGGTAGAGATTGTGTTGAATCAAGATTTGGAAAAGGCAAAGGTCACTCGGGATAA TATGCAAGCAATTGAAGGTATACATAACCTTGAAGGTATTGATGACACTGACAGGATTCGCTATGACAAAGAAAATGGCAACATTGCCACTTGTCAGGAA AAATTCTCTGCATCATTGCAAGAAGACCACGCTTTGGTAGAGAATGGATTGCATCAAGATTTGCAGAAGACTGAGGTCATTGAGAATGATATGCAAACGA TTGGTGATGATGTGATGATGGTAGAATCAGATGAACAGCAAGCTGCAAAGAGGCCCAGGCGTACCTCCTGA
AA sequence Show only first row Show all	>Potri.005G155600.6 pacid=42803842 polypeptide=Potri.005G155600.6.p locus=Potri.005G155600 ID=Potri.005G155600.6.v4.1 annot-version=v4.1 MKNYFNEEEDEIAELAAGQLLVTQECDIPKNETSSLVCVDADAIDCDNASTRVRPRTVGEDLNTEEGNSAAPHLTSLSHEHDPCFPVDGFDSKMIFSEHV TRISCHEAPLLGESQLNCGLRDGPPSSAELVDEHMEECSPSSPTPDIADAGVILNDLTPTNCFSYSEMSDIGIVVDYVVYRGKYCTGCLVTFSYSGIKIN GTTAHGDEGTFSFETGIDEIVSIESQNIQRFETVMIKLHILSKDAVQADNTQGMSGVEELEVVVVEPNWSRKWEEITSLNVKYSPLLSVIHDMDIAMNGV DSLQQRRYFPSFDSEFEDVIYPKEDSDAVSISKRDVDLLQPETFINDTIIDFYIKYLKNQIPSEEKQRYHFFNSFFFRKLADLDKDPSNVKDGKAAFLRV HKWTRKVDLFGKDYIFIPVNFNLHWSLLVICHPGEIAGVKDEDTEISVKVPCILHMDPIKGTHAGLKNLVQSYLWEEWKERQKGSSEDMSSKFLNLRFVP LELPQQENSFDCGLFLLHYLELFLVEAPVNFSPFRINGFTKFLNGDWFPPAEASLKRTLIQRLISELLQNCSREVSSSGCSSEQQSNFPEINGKESGLEL VSDRYSPDGACRVNLSSSDHGQGIEITLLGVSPMRNSHCVNDPGLVLREFFDPEVAAGSLLAQCPSFDQPSSYHHLNGTRSQIEQDDTETGEQFVYFPSG ETVCQKVAGITPQDGSISCSFKAFGADDSWNPGISLQADDNDSSSETSDCASDDSDVGIIENFPAMEDAGICQKEKFDQRKSPLMENVGCLTVSLASASG EMLENSAFGGIRNLRSTEDIDKIHDGNEHVSLASCQGNFSASLQEDPNLVEIVLNQDLEKAKVTRDNMQAIEGIHNLEGIDDTDRIRYDKENGNIATCQE KFSASLQEDHALVENGLHQDLQKTEVIENDMQTIGDDVMMVESDEQQAAKRPRRTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09730			Cysteine proteinases superfami...		Potri.005G155600 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.017G010800 [exp]	1.41	0.8649
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	2.44	0.8196
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	6.92	0.7816
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	9.38	0.8066
AT4G34660			SH3 domain-containing protein ...		Potri.003G105200 [exp]	10.53	0.7142
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Potri.008G085400 [exp]	12.12	0.7020
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Potri.015G089300 [exp]	13.49	0.7738	ATGSL08.2
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.001G066200 [exp]	15.65	0.7173
AT2G24960			unknown protein		Potri.013G025200 [exp]	16.52	0.7471
AT1G77310			unknown protein		Potri.002G078800 [exp]	19.28	0.7654

Compare expression of checked genes

Potri.005G155600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.