Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01710 312 / 2e-105 Chaperone DnaJ-domain superfamily protein (.1) AT5G64360 209 / 1e-63 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT5G09540 192 / 5e-59 Chaperone DnaJ-domain superfamily protein (.1) AT5G37380 152 / 4e-42 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT3G06340 135 / 9e-35 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G53150 131 / 3e-33 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G62970 130 / 4e-33 Chaperone DnaJ-domain superfamily protein (.1) AT2G25560 127 / 4e-32 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19570 126 / 6e-32 Chaperone DnaJ-domain superfamily protein (.1) AT5G27240 125 / 4e-31 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105500 [exp] 514 / 0 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G098800 [exp] 154 / 3e-41 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 154 / 3e-41 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 152 / 1e-40 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 151 / 3e-40 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.017G044600 [exp] 149 / 1e-39 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.014G165600 [exp] 145 / 4e-38 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 145 / 6e-38 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 144 / 9e-38 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015891 [exp] 380 / 4e-131 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10009275 [exp] 372 / 5e-128 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10008983 [exp] 155 / 1e-41 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 151 / 2e-40 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 149 / 1e-39 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037698 [exp] 144 / 2e-37 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10014927 [exp] 142 / 2e-37 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10015692 [exp] 142 / 2e-37 AT5G64360 179 / 5e-50 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10001744 [exp] 136 / 6e-36 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 134 / 2e-35 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.005G156100.7 pacid=42802757 polypeptide=Potri.005G156100.7.p locus=Potri.005G156100 ID=Potri.005G156100.7.v4.1 annot-version=v4.1 ATGAACGAAAATCCCAACAGAGCCGAAGCCGAGCGCCTTCTCGGAATAGCTGAGAAACTCTTACAATCACGAGATCTCAGCGGCACAAAAGACTTCGCAG TTTTAGCTCAAGAAACCGAACCCCTTTTGGAAGGCTCAGAACAGATCTTAGCCGTTGCCGATGTGCTTTTATCAGCCGAAAAACGCATCAACAATCACCA CGACTGGTACTCGATCCTGCAAATCAGCCAAAAAACTGACGATTCCGAACTTGTAAAAAAGCAGTATCGTCGCCTCGCATTACTCCTCCATCCAGACAAG AACAGGTACCCTTTCGCGGACCATGCCTTCAAGCTTGTCGCTGATGCTTGGGCTGTTTTGTCTGATACTTGTAAAAAAACGTTGTACGATAATGAATTGA GTTTGTTTTCGAAGATTGATTTGTCTACTTCAGGGAAATTACCGGTCAGGAGAAGCCAGAGACCGGTTGGCCATAAAAAGGCTGAAAATTTGAAAACTAA TGTCAATAACGTGAGTAATCAACAAGAAGGGCAGGGACAGAGAGCTAAATTATCTTCGTTCTGGACCGCATGTCCGTATTGTTATATTTTGTATGAGTAT CCTAGGGTTTACGAGAATTGTTGTTTGCGGTGTCAAAACTGCCAGAGAGGGTTTCATGCGGTTTTAATACCGTCACTGCCGCCTCTGGTTCCCGGGCAGG AGTCTTATTATTGTTGCTGGGGGTTCTTTCCTTTGGGGTTTACACTTGGTATTGCAGGGAGTGGGGAGAAAAATGGCGGGGGAGGTGCGGGGTTTCCTAA TTGGATGCCGCCAGTGTTTGGAACAGAGCAGCTGCAAGGAGGTGATAAGAATTGTGTCAACGTGGCGGCAAATGTGGGCGGTAAGAGTGGTAGCGGTGGT GGCCATGGTGGCGCTGGTATGAGGAGTAATGCTGCATCTGCCACGCCAGTGAGGGTTGATGGGGAGAGTAAGGATAGAATGGTGGAGGCTTCTGGTAGGA GTGCAATGGGAATGCCTGGGAGTGCAACGGGCACGGCTGGGAATTCAACGGGGATGGCAGGGCCCAGGAAGAGAGGAAGGCCTAGGAAATATCCTGTGCA GGCGTAG
AA sequence Show only first row Show all	>Potri.005G156100.7 pacid=42802757 polypeptide=Potri.005G156100.7.p locus=Potri.005G156100 ID=Potri.005G156100.7.v4.1 annot-version=v4.1 MNENPNRAEAERLLGIAEKLLQSRDLSGTKDFAVLAQETEPLLEGSEQILAVADVLLSAEKRINNHHDWYSILQISQKTDDSELVKKQYRRLALLLHPDK NRYPFADHAFKLVADAWAVLSDTCKKTLYDNELSLFSKIDLSTSGKLPVRRSQRPVGHKKAENLKTNVNNVSNQQEGQGQRAKLSSFWTACPYCYILYEY PRVYENCCLRCQNCQRGFHAVLIPSLPPLVPGQESYYCCWGFFPLGFTLGIAGSGEKNGGGGAGFPNWMPPVFGTEQLQGGDKNCVNVAANVGGKSGSGG GHGGAGMRSNAASATPVRVDGESKDRMVEASGRSAMGMPGSATGTAGNSTGMAGPRKRGRPRKYPVQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.005G156100 [exp]	0	1
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Potri.002G243300 [exp]	10.09	0.7442
					Potri.017G055050 [exp]	10.19	0.7852
					Potri.001G252604 [exp]	29.66	0.7822
AT5G24490			30S ribosomal protein, putativ...		Potri.012G026375 [exp]	35.19	0.7699
AT5G24490			30S ribosomal protein, putativ...		Potri.012G009001 [exp]	42.42	0.7654
AT3G57340			Heat shock protein DnaJ, N-ter...		Potri.006G153700 [exp]	44.02	0.7118
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191000 [exp]	46.47	0.7673
					Potri.012G019350 [exp]	46.78	0.7646
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.016G118900 [exp]	47.85	0.7646
					Potri.001G073350 [exp]	51.11	0.7618

Compare expression of checked genes

Potri.005G156100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.