Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24560 639 / 0 UBP16 ubiquitin-specific protease 16 (.1) AT5G65450 460 / 1e-147 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 390 / 1e-122 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 388 / 4e-121 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G17110 372 / 2e-112 UBP15 ubiquitin-specific protease 15 (.1.2) AT3G14400 223 / 2e-61 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 210 / 4e-56 UBP23 ubiquitin-specific protease 23 (.1) AT5G46740 141 / 3e-34 UBP21 ubiquitin-specific protease 21 (.1) AT2G22310 131 / 7e-33 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G17895 134 / 5e-32 UBP20 ubiquitin-specific protease 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104800 [exp] 1435 / 0 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.006G270600 [exp] 397 / 8e-125 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.018G009500 [exp] 399 / 1e-124 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 388 / 2e-119 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 387 / 5e-118 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.011G112800 [exp] 231 / 3e-64 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 226 / 6e-63 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.018G107500 [exp] 224 / 2e-60 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 216 / 1e-57 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009273 [exp] 815 / 0 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10015894 [exp] 492 / 8e-161 AT5G65450 216 / 9e-60 ubiquitin-specific protease 17 (.1) Lus10026918 [exp] 392 / 2e-122 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 390 / 8e-122 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10015893 [exp] 358 / 1e-113 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10013726 [exp] 236 / 6e-66 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 232 / 9e-65 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10035825 [exp] 215 / 2e-57 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 214 / 3e-57 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10032623 [exp] 186 / 1e-47 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G156900.1 pacid=42804487 polypeptide=Potri.005G156900.1.p locus=Potri.005G156900 ID=Potri.005G156900.1.v4.1 annot-version=v4.1 ATGCATGTCGAGGGGGATCTAGGGTTTTCGAGCCTGGTGGTCCTTGTTTTCTGTGTAGTGATTATTCCGCTGGGCTGTTTTATAATTAGGTGTAAATGGC GAGGTGCGGTTGCGAGAAAGGAGGATATCAAGAGGCTGTTGGTTTTGGCAGCGGAGGAAGCCGCTAGGGCTGAGTTTGAGGCCGCGGCTTCATACGGCAC CGTTCCGGTGTTGACAAATAACTATCAATGTGCTGTTTGTTTTTGCCCGACAACGACACGGTGTGCCCGCTGTAAAGCTGTTAGATATTGTTCTGGCAAG TGTCAAATTATCCACTGGCGACAAGGTCACAAGGAAGAATGCCATCCTCCTACCACTACATATCACATTAACGATGATGGAAGTAATCCTGGCCAGAGGG CTGCAAAGGGAGACCAACATGATATTTATGATGGCAGACACGAGAATAGACCAGTCGATACATTCTCTGTGGAGCCTGTAGTGTCTGATTCCAATTACTC TCCTGGAGTTTCATTTGTAAAGGATGATGATATTAAAGTTGATTCTGTTTTAGATACAGAAGGAACAGATTCCATTTTTGAATCATCAGGCACCTCATTT TCTGGATTTTCTACTCCTACTGGCTCTTCGTTTTCTGAATTCTCTGCTCATTCAGGTGGTGAATCATCTGATAATGTCTCTGTAAGTGAGAGCATCGGTT CAAATGAAACTGAGGGATCAGATGGACAAATGCCAGCTGATACTGCTCCTGACACACTGGAGTCCAGTTTGAACAAGGTGGATGTGACCAAGCCATTGTC TCCAAAGTTTGCTACTTTGGTTGATTCTGTAGATAGTTTTAATAAATTGAGTAAATCAAATCAGAGTAAACCTCACGGAAATGATGGGGAGAGCCAGTGC TCATCTAGCTCTTCAGGTCATAGCATCAGTGCCAGGAATGATGATTCAATCACAAAGCCAGCTAAAGTTTCTTCTGGTTTCTGGGGTAGAACCCTGGATT CTGCTGTGTCCAGCAGTGATACCATGGACAGATCTGCTATGTCGAATTTCACTGGCCCTGTTAACAGCAAGCGATCAAATGATGAATCATTCATACATTT CAAGTTTAATCTATCTGGAAGTGATGCTCCTACCCAGCATGCAAAAAGCACAAGGGTGAATGACATCATACCAGATGATGCACTCCCTTCCGCTTCTGAT AGAGCTCTTTCATCAGAAAAGAATGGTGTTGATGCTCAAAAAGTCAAGAACTCCCCATGCATAAGCTGTGAAAGGTCCAGTCATATTGATGTTAACTCTC GTGGTGATTTGAATGTTTCCAGTGAGCGTAAATCTGTATCATCATCCTCTTCTTATGGTCATGTTTCTTCCAGTTCTGGAGGAGTTAAATTAGATGCAGG TGCTTCAAAAGTATGCAGATCTCAATCCTTGATATCTGAAAGATCAGATGTTGTTGTTAATGACCCTGTTGGTGCTTTACATCTATCCAAGTCCAGATTA TCATCTAATGCTTCTCAGACCCATTTGACTTCTACCATCGGTGGGCACTCAGTTTCAAGTGTGCAATATGGAAATGTGGAACTGGGTGCTGCAAGTTCCT CTCAAATGGCAAGCTCTTCTCCTAGTTCTATTAATGGATTGAAGTCATCAGTGTGGAAAGTTGTTGACCAATTCAGAGGACCTAAATGTGGAAGATATAG TAAAAAGGGCCTTTTCCCATATGATTTATTTGTAAAGTTATACAATTCGAGTAAGGCGGAAATGCGACCATGTGGTCTTATCAACTGTGGAAACAGCTGC TATGCTAATGCTGTTCTACAATGCTTGGCATTTACTCCTCCTTTGACTTCGTTTTTTGTACAAGGGCTCCATTCCAAATCCTGTTTAAATAGAGAATGTT GCTTCTCTTGTGAGTTTGAAAGTATAATTTTGAAGGCAAAGGAAGGGAAATCTCCACTTTCTCCCCTTGGCATTCTATCCCAACTACAGAATATCGGGAG TCAGCTTGGTAATGGGAGAGAAGAAGATGCACATGAATTCCTAAGGTATGCAATTGATGCAATGCAATCTGTTTGCCTTAAGGAAGCTGGGGTAAATGCA ATGGACTCCTTTGCAGAAGAAACCACTCTCATAGGCCTTACATTCGGAGGCTACCTTCACTCAAAGATAAAATGCATGAAGTGCCATTACAAGTCAGAGC GGCAAGAAAGAATGATGGATCTTACTGTTGAAATAGAGGGGAATATAGGGAAGCTTGAAGATGCACTAAGACGATTCACGAGTGCTGAGATTCTGGATGG AGACAACAAGTACCAATGTGGCAGATGCAAATCTTACGAGAAGGCGAAGAAAAAAATGACAATATTGGAGGCTCCCAATGTCCTTACAATCGCATTGAAG CGCTTTCAGTCTGGTAAATTTGGAAAGCTCAATAAATCTATCCGGTTCCCAGAGATCCTGGACTTGGCACCATATATGAGTGGAACTAGTGATAAATCAC CCATATACAGGCTTTATGGGGTGATTGTTCACTTGGATGTCATGAATGCTGCATTTTCTGGTCACTATGTGTGCTATGTCAAAAACATCCAGAACAAGTG GTTCAAAATTGATGACAGCACAGTTACAGCTGTGGAACTTGAAAGGGTTTTATCAAAAGGCGCATACATGCTTCTTTATGCAAGGTGCTCACCAAGGGCC CCAAGATCGATAAGGAGCAGAATAATATCTTCTGATCCTAAAAATAAATGCTACACCTCCAAAATCAATGCAACAAACACTGCATTGGATTCAAGATCCA CATCCATGCAATCAAGTGCTTTCCAATTGCATCCCGATTCAATTCCTCCAGATAATTTGGCCAGTGTTGAATCTTTCTATATGAAGTTCCACCGGCTTCA GAGGATTTTAGAAGAGGACTCATCAAGTGACAGTTTCTCTTTTACTAGTGGCAACTCCGATGAAGGTTCGTGCAGTACTGACAGCACCCATGATTCTACA AGTACTGATGACCTTTCTGATTACATTTTTGGAGGTTGGAACTCTTGGCAGAATACATCTGATTCGGATACTTCTTCATCTTCCCCCCCTTTGTACTCAA GGCAATCACCTCATGGTGAGATGAACCAGCATGGTTCATATGCAGATTCAGGGGTTGGGGGTTCTGATCTTTGGGACAGGATACCCAGTGAGAGCAGCAA GCTGGTGTATTTGGAAGGTAAGGGAGGAACTTTTTTGCATTCTGACACGGCTAAACAAGGTAGAAAGTTAGCTAGTAGTAGTAGTTATGACTCAACAAAA TTAGGATCAGTTAACCCTTTAAATGGTGTAAAATCCGGGGTATCCTTTAGAAGAACAGCGAGCGAAAGAACAGATTGA
AA sequence Show only first row Show all	>Potri.005G156900.1 pacid=42804487 polypeptide=Potri.005G156900.1.p locus=Potri.005G156900 ID=Potri.005G156900.1.v4.1 annot-version=v4.1 MHVEGDLGFSSLVVLVFCVVIIPLGCFIIRCKWRGAVARKEDIKRLLVLAAEEAARAEFEAAASYGTVPVLTNNYQCAVCFCPTTTRCARCKAVRYCSGK CQIIHWRQGHKEECHPPTTTYHINDDGSNPGQRAAKGDQHDIYDGRHENRPVDTFSVEPVVSDSNYSPGVSFVKDDDIKVDSVLDTEGTDSIFESSGTSF SGFSTPTGSSFSEFSAHSGGESSDNVSVSESIGSNETEGSDGQMPADTAPDTLESSLNKVDVTKPLSPKFATLVDSVDSFNKLSKSNQSKPHGNDGESQC SSSSSGHSISARNDDSITKPAKVSSGFWGRTLDSAVSSSDTMDRSAMSNFTGPVNSKRSNDESFIHFKFNLSGSDAPTQHAKSTRVNDIIPDDALPSASD RALSSEKNGVDAQKVKNSPCISCERSSHIDVNSRGDLNVSSERKSVSSSSSYGHVSSSSGGVKLDAGASKVCRSQSLISERSDVVVNDPVGALHLSKSRL SSNASQTHLTSTIGGHSVSSVQYGNVELGAASSSQMASSSPSSINGLKSSVWKVVDQFRGPKCGRYSKKGLFPYDLFVKLYNSSKAEMRPCGLINCGNSC YANAVLQCLAFTPPLTSFFVQGLHSKSCLNRECCFSCEFESIILKAKEGKSPLSPLGILSQLQNIGSQLGNGREEDAHEFLRYAIDAMQSVCLKEAGVNA MDSFAEETTLIGLTFGGYLHSKIKCMKCHYKSERQERMMDLTVEIEGNIGKLEDALRRFTSAEILDGDNKYQCGRCKSYEKAKKKMTILEAPNVLTIALK RFQSGKFGKLNKSIRFPEILDLAPYMSGTSDKSPIYRLYGVIVHLDVMNAAFSGHYVCYVKNIQNKWFKIDDSTVTAVELERVLSKGAYMLLYARCSPRA PRSIRSRIISSDPKNKCYTSKINATNTALDSRSTSMQSSAFQLHPDSIPPDNLASVESFYMKFHRLQRILEEDSSSDSFSFTSGNSDEGSCSTDSTHDST STDDLSDYIFGGWNSWQNTSDSDTSSSSPPLYSRQSPHGEMNQHGSYADSGVGGSDLWDRIPSESSKLVYLEGKGGTFLHSDTAKQGRKLASSSSYDSTK LGSVNPLNGVKSGVSFRRTASERTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.005G156900 [exp]	0	1
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	3.00	0.7755
AT3G20720			unknown protein		Potri.011G132800 [exp]	6.32	0.7415
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.017G148800 [exp]	9.79	0.7109
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.019G031500 [exp]	15.87	0.7413
AT4G32160			Phox (PX) domain-containing pr...		Potri.018G026000 [exp]	18.22	0.7489
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.012G085600 [exp]	19.59	0.6794
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.004G090900 [exp]	20.00	0.7312
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	29.00	0.6920
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	40.24	0.6746
AT4G35890			winged-helix DNA-binding trans...		Potri.005G109400 [exp]	40.47	0.7028

Compare expression of checked genes

Potri.005G156900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.