Plant FIBer expression Database

Potri.005G157201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G157201.1 pacid=42804401 polypeptide=Potri.005G157201.1.p locus=Potri.005G157201 ID=Potri.005G157201.1.v4.1 annot-version=v4.1
ATGACCGATTCAACAGGAAAATCCAGGGAAATACGCCAAAGACAGTCACCCACGACTCTTACCTCAGCTGCCCACTATCCTCCACGATACCATTTCAAAA
GGCCACGTTGTCGTGACCAACAGTCCTGCAATGGCAGGACTGTTAGTCCCCTGTTTTTCCTCAAACAGGGACGAACGTGCTTTGGCACGAAGAGAGGGCA
GAAAGGCCACAAAAAAGGAAGGAGGATAAAAACCCAGGGGGGAGAGAGAATAAAAAAACCAGAGAAAAACCAGGGGGGGCAAAAAGACAGGGACGAGGAG
AGAAAAACCAGAGGGACGAACAAGACAGAGAAGAACGAAAACACAGGGAACTGGTGA
AA sequence
>Potri.005G157201.1 pacid=42804401 polypeptide=Potri.005G157201.1.p locus=Potri.005G157201 ID=Potri.005G157201.1.v4.1 annot-version=v4.1
MTDSTGKSREIRQRQSPTTLTSAAHYPPRYHFKRPRCRDQQSCNGRTVSPLFFLKQGRTCFGTKRGQKGHKKGRRIKTQGGERIKKPEKNQGGQKDRDEE
RKTRGTNKTEKNENTGNW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G157201
[exp]
0 1
Potri.009G048602
[exp]
3.16 0.8522
AT5G59340 HD WOX2 WUSCHEL related homeobox 2 (.1... Potri.001G237900
[exp]
3.31 0.9115 WOX2.1
Potri.015G106725
[exp]
15.62 0.8746
Potri.005G232450
[exp]
16.61 0.7865
AT5G35200 ENTH/ANTH/VHS superfamily prot... Potri.018G100801
[exp]
24.12 0.8821
AT3G57520 RS2, ATSIP2 raffinose synthase 2, seed imb... Potri.006G052800
[exp]
31.17 0.8216
AT2G47180 ATGOLS1 galactinol synthase 1 (.1) Potri.010G150400
[exp]
35.09 0.8460 Pt-GAS1.2
AT1G54100 ALDH7B4 aldehyde dehydrogenase 7B4 (.1... Potri.001G167100
[exp]
35.24 0.8282 ALDH7.1
AT1G68765 IDA INFLORESCENCE DEFICIENT IN ABS... Potri.013G074000
[exp]
36.41 0.8653
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Potri.007G084800
[exp]
37.46 0.8283 IFS1.47,CYP736A4v1

Potri.005G157201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.