Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24580 786 / 0 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) AT5G19390 577 / 0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) AT5G12150 563 / 0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104300 [exp] 1274 / 0 AT4G24580 793 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.001G275200 [exp] 624 / 0 AT5G19390 1080 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.009G069700 [exp] 617 / 0 AT5G19390 1060 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036167 [exp] 682 / 0 AT4G24580 697 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10005733 [exp] 347 / 4e-112 AT4G24580 350 / 1e-113 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10036048 [exp] 337 / 1e-109 AT5G19390 414 / 3e-142 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Lus10036047 [exp] 125 / 1e-29 AT5G19390 635 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0409 [poplar] [flax] GAP PF00620 [poplar] [flax] RhoGAP RhoGAP domain CL0409 [poplar] [flax] PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.005G157400.1 pacid=42804350 polypeptide=Potri.005G157400.1.p locus=Potri.005G157400 ID=Potri.005G157400.1.v4.1 annot-version=v4.1 ATGACTACCAACAAAAACACAGAGTCTTCTAAGGGAGATGGCGGTCCTCCGCCTCCACCTCCACCTCCAGCACCAGGACAGCTTGAAAATCTGCGTTTTC ACGGTGGCAATGCGATTTTCAAGAGCGGGCCGCTTTTTATTTCATCCAAAGGAATTGGATGGACATCCTGGAAAAAAAGGTGGTTTATTCTGACACGGAC ATCACTGGTTTTCTTCAGGAGCGATCCGAGTGCTATTCCTCAAAAAGGGAGTGAAGTGAACCTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAGT GTGGTTGTCAAAGCAGAGAAAAAGCTCTTGACTGTTCTCTTTCCTGATGGCCGTGATGGACGGGCATTCACTCTCAAGGCCGAATCTTCTGAAGATTTAT ATGAATGGAAGACTGCTCTTGAGAATGCCCTGGCACAGGCACCAAGTGCTTCTCTTGTGATGGGGCAAAATGGTTTCTTCCAGAATGACCAGGCTGATGG AGCTGATGGTTCCTTGGAACAGTCGAAGGATAAGCAGCCAGTAAAATCCCTGGTCATTGGCAGACCAATTTTACTTGCTTTAGAAGATGTTGATGGATCT CCATCTTTTCTGGAGAAGGCTTTAAGGTTTATAGAAGACCATGGAATAAAGGTGGAAGGCATCTTGCGGCAAGCTGCAGATGTTGATGATGTTGAGCATC GAATTAAGGAATTTGGACAGGGAAAAACTGAGTTCTCTCCGAAGGAGGATGCACATGTCATTGCTGATTGTGTCAAGTATTTCCTTCGAGAGTTGCCATC ATCTCCAGTCCCCACATCATGCTGCAATGCACTGCTAGAAGCATGTAGAACTGATCGTGGCAGTAGGGTAAATGCCATGCGGGTTGCAATATGTGAAACG TTCCCGGAGCCAAATCGTCGCTTATTGCAGAGAATTCTTTTAATGATGCAAACTGTGGCTTCTCACAAAGCTGCAAACCGAATGAGCACATCTGCTGTGG CTGCTTGTATGGCTCCCTTGCTTCTTCGTCCCCTTCTGGCTGGTGACTGTGAAATTGAATCCAATTTTAATGTGGGTGGTGATGGTTCCATCCAGCTTCT GAAAGCAGCTGCTGCAGCTAATCATGCACAAGCCATTGTTATAACATTATTGGAAGAGTATGAAAAAATATTCAGTGAAGGTTCCATGTCCCCAGGACTG TACTCTGACTCAGATGAATGTGGAAGTGAGGATGAGGAGGTAACTGATGATGATGAGTCTTATGTAGATGATGCAACGGAAGAATCTGATGTATATACAG ATGAAGATCATGACAATGCATCAAGTGGAACCAGCACTCAGAGTGGTGAATCTGGCGAAGATGATCCGTCTGACTATGAGATGCAGGGCAGTAATGATTG TAGTTCTGGTTCCAAGTCCCCTGAACCTGAAGCAGACAATGATTTGAAAGTTGAACAAAAGCTGTCATCATGTCCAGTTCAAACCTCATCGCATCAACAT GATAATGTAGAAAAGAGGGAGGATATTCCAGATCAAAGTAACAACAGTTTGACAATGCAGTCAAATAAGTCAGATGACCTGTCTGTAGATGTTTCTACCG AAACAAGTTTGAAGAATAAGACTGCTGATCACAAGGCATCCCCAGATGCTAAAAAACCTTCAACTATATCAAATGAACCTGTGCGTGGAAAGCGTCCAAC TGTTTGGGGACGTACCTCTGCCAAGAAGAACCTTTCCATGGAATCCATTGATTACCCTATTGAGGATGATGTTGAAATCCAGAAGCTGGAGGCAAGTAAA ATTGAGTTGCAAAATAGAATTTCTGAAGAGATCAAAGGTAATGCCATTCTGCAAGCCAAGTTGAAAAAACGAAAGAAGGCTTTGCACGATCATCGTCAAG CCCTCCAGCAAGATGTGGCAAGACTACAGGAACAGCTGCAAAAGGAGAGAGATAAGAGAAAAGTTCTAGAAGCAGATCTTAACACTTCTAGAGGACCCTT GCAAGTTCCAGTTACAATTGATGAAAATATAAAGGCAGGTCTTGAGGAAATAACTCAAGCAGATGCAAATGTTGCCAATTTGAAGTGGAAGGTCAATGAT CTAGGTGCACAGCTTAATCAACAGCATGAGCAACACTCTGGTTCTATGCATGGTTTGATCAATCAGCCCATGAATGCTTCGTTGCATGAAGCCAAATGGA ATGATGAACGGAAGGATGCTGAAGCTACTGGTACTTCTCAATTTAGACGTCCTGCAAGCAAGGATATGTGTACGGATGGGACTGAAACCCAGCAGCTGGA TTCAGCACATAGTGGCAACTCCAGACCCGTTTCTTCAACCAATTTCAAGAGGTCCAGTACAAGGAGTGAGGGAGTGAATTCCACCACTTCTGCATTGACA AGATTGACTACCCGACTCAACTTTCTGAAGGAACGCCGTAGCCAGATTGCAAATGAAATCCAGAATATGGACAAGGGCCGGGGTCCAGATCAAAACCTGG AGAAGAGCCAGGGTTCAGAAATACCTTCTTTTCAAAAACTAGAAAAAGATAAAGAATTGGGAAAAGAGGGGAAACCGCTTCAGAATTCCAAAAAATCTAC AGCATCAGATGTCCAGTCACTCCAGGACCTAGATGGTGGACGATATTCGGAAGGTGTTCCTCCGCAGAGTTTGCAAAGCGAGAAGTCCTACATTGCCGGC AAAGGCCAACCTCTAGTGCCTCCAAGGATTAATTCAAGATGA
AA sequence Show only first row Show all	>Potri.005G157400.1 pacid=42804350 polypeptide=Potri.005G157400.1.p locus=Potri.005G157400 ID=Potri.005G157400.1.v4.1 annot-version=v4.1 MTTNKNTESSKGDGGPPPPPPPPAPGQLENLRFHGGNAIFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS VVVKAEKKLLTVLFPDGRDGRAFTLKAESSEDLYEWKTALENALAQAPSASLVMGQNGFFQNDQADGADGSLEQSKDKQPVKSLVIGRPILLALEDVDGS PSFLEKALRFIEDHGIKVEGILRQAADVDDVEHRIKEFGQGKTEFSPKEDAHVIADCVKYFLRELPSSPVPTSCCNALLEACRTDRGSRVNAMRVAICET FPEPNRRLLQRILLMMQTVASHKAANRMSTSAVAACMAPLLLRPLLAGDCEIESNFNVGGDGSIQLLKAAAAANHAQAIVITLLEEYEKIFSEGSMSPGL YSDSDECGSEDEEVTDDDESYVDDATEESDVYTDEDHDNASSGTSTQSGESGEDDPSDYEMQGSNDCSSGSKSPEPEADNDLKVEQKLSSCPVQTSSHQH DNVEKREDIPDQSNNSLTMQSNKSDDLSVDVSTETSLKNKTADHKASPDAKKPSTISNEPVRGKRPTVWGRTSAKKNLSMESIDYPIEDDVEIQKLEASK IELQNRISEEIKGNAILQAKLKKRKKALHDHRQALQQDVARLQEQLQKERDKRKVLEADLNTSRGPLQVPVTIDENIKAGLEEITQADANVANLKWKVND LGAQLNQQHEQHSGSMHGLINQPMNASLHEAKWNDERKDAEATGTSQFRRPASKDMCTDGTETQQLDSAHSGNSRPVSSTNFKRSSTRSEGVNSTTSALT RLTTRLNFLKERRSQIANEIQNMDKGRGPDQNLEKSQGSEIPSFQKLEKDKELGKEGKPLQNSKKSTASDVQSLQDLDGGRYSEGVPPQSLQSEKSYIAG KGQPLVPPRINSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	0	1
AT2G27900			unknown protein		Potri.009G002900 [exp]	2.44	0.8069
AT1G20670			DNA-binding bromodomain-contai...		Potri.006G112000 [exp]	2.82	0.8105	BRD919
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	3.46	0.8127
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.001G120000 [exp]	8.24	0.7795	NAC038
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	10.95	0.8089
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	12.96	0.8050
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.001G012300 [exp]	15.49	0.7368
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	17.43	0.8046
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	17.88	0.7890
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.009G014500 [exp]	18.00	0.7542	Pt-HB1.8

Compare expression of checked genes

Potri.005G157400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.