Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	No hit found
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G157901.1 pacid=42802571 polypeptide=Potri.005G157901.1.p locus=Potri.005G157901 ID=Potri.005G157901.1.v4.1 annot-version=v4.1 ATGATATATAATTGTAATAATAATAGTGATAATAATCAAAATAATAATGATGGTGTTGGTGGTGGTAGTGGTAGTGGTAGTGGTAGTAGTGGTGACGACG ACGGTAGTCGTAGTGGTGGCAGTAGTATTAATGGTGGTGGTAGTAGTGATACTAATGGTGATGGTGGTGGTCGTAGTAGTGATGATAGTGATAATAATGA TAATGATAATGATATTACCACTGCTAATAATAGTGGTAGTGGTAGTAGCAACAACAACAATAGTAGTAGTAGTCGTGGTGGTGGTAGTCATAGTATTAAT GACAGTAGTGGTAATAGTACTAATAGTAGGAGTAGCAACAATAATGATATTAGTAATAGTAGTGGTAGTCGTAGTAAGAGGAGGAGGAGGAGTAAGAGTA GTAATGGTAGTGGTAGTCTTACTAGTAGTGGTAGTAATAGTAGTAGTGGTAGTTGTGGTGGTGGTGGTCGTAGTAGCAGAAGTAGCAATAATAGTAGTAG TAGTAGTAGTAGTAGTAGTAGTAGTAGTAATATTAGTCGTGGTAGTGATAGTAGTAGGAGTAGTAGTGGTGGTGGTGGTGATGGTAGTGGTAATAGTGGT GGTGGTGGTGGTGGTAGTCGTGATAGTGATGATAATAGTGGTGGTGGTGGTGGTGGTGGTAATGGTAATAATAATTAA
AA sequence Show only first row Show all	>Potri.005G157901.1 pacid=42802571 polypeptide=Potri.005G157901.1.p locus=Potri.005G157901 ID=Potri.005G157901.1.v4.1 annot-version=v4.1 MIYNCNNNSDNNQNNNDGVGGGSGSGSGSSGDDDGSRSGGSSINGGGSSDTNGDGGGRSSDDSDNNDNDNDITTANNSGSGSSNNNNSSSSRGGGSHSIN DSSGNSTNSRSSNNNDISNSSGSRSKRRRRSKSSNGSGSLTSSGSNSSSGSCGGGGRSSRSSNNSSSSSSSSSSSSNISRGSDSSRSSSGGGGDGSGNSG GGGGGSRDSDDNSGGGGGGGNGNNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.005G157901 [exp]	0	1
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.011G063700 [exp]	5.65	0.7852
AT2G31081		CLE4	CLAVATA3/ESR-RELATED 4 (.1)		Potri.013G119100 [exp]	13.63	0.7793	Pt-CLE3.2
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.014G030900 [exp]	21.63	0.7116
AT4G25250			Plant invertase/pectin methyle...		Potri.015G128900 [exp]	22.51	0.7686
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.004G167000 [exp]	25.84	0.7474
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.011G063750 [exp]	38.41	0.7261
AT1G06225		CLE3	CLAVATA3/ESR-RELATED 3 (.1)		Potri.019G091100 [exp]	38.98	0.7102	CLE3.1
AT2G03240			EXS (ERD1/XPR1/SYG1) family pr...		Potri.006G035100 [exp]	54.69	0.6616
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.019G090800 [exp]	69.23	0.6937	CLE4.1
AT1G17030			unknown protein		Potri.001G381600 [exp]	69.85	0.6396

Compare expression of checked genes

Potri.005G157901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.