Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50010 130 / 5e-35 bHLH sequence-specific DNA binding transcription factors;transcription regulators (.1) AT5G09460 89 / 1e-19 bHLH bHLH143 sequence-specific DNA binding transcription factors;transcription regulators (.1) AT5G64340 85 / 2e-18 bHLH bHLH142, SAC51 SUPPRESSOR OF ACAULIS 51, sequence-specific DNA binding transcription factors;transcription regulators (.1) AT4G33880 50 / 9e-07 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT2G14760 50 / 1e-06 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G59640 49 / 1e-06 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT1G66470 49 / 2e-06 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT3G21330 49 / 4e-06 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27740 48 / 4e-06 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT1G09530 48 / 7e-06 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G103300 [exp] 566 / 0 AT5G50010 98 / 4e-23 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.017G048000 [exp] 171 / 5e-50 AT5G09460 106 / 7e-26 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.007G112800 [exp] 171 / 8e-50 AT5G09460 114 / 1e-28 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.005G060900 [exp] 52 / 1e-07 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 52 / 2e-07 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G294300 [exp] 51 / 5e-07 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.007G044600 [exp] 50 / 7e-07 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G089000 [exp] 49 / 2e-06 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G088900 [exp] 49 / 4e-06 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042647 [exp] 51 / 5e-07 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 51 / 6e-07 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001068 [exp] 50 / 1e-06 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 50 / 2e-06 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10033592 [exp] 49 / 3e-06 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10033488 [exp] 47 / 4e-06 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011899 [exp] 49 / 6e-06 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10022833 [exp] 48 / 1e-05 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10017634 [exp] 47 / 1e-05 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10024811 [exp] 46 / 2e-05 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G158100.1 pacid=42804529 polypeptide=Potri.005G158100.1.p locus=Potri.005G158100 ID=Potri.005G158100.1.v4.1 annot-version=v4.1 ATGGGAGAAGATTGGGGATCTCTGTTTCCTCAGCAGCGATTTAATTGGCAATCACCCAATTCAAATTACTTGGATGCTTCACTTGCCTTTGGGCAGCAAA ATACTCTTCCTTTGCTTATGGATCCGAATACTAACATGGTCTTTACAAATGGGATCGGATATCCATTTACTGAGCTACTGCCCTCACAGGCTAGCCAGGA AAATGAACCTCGTGGATGGTTTCATGGTTTGCCTCACTTCCGACAGGCCTTAATGCCTCCTTCAAACTCTGTTCATAAAGAGAGAAGGCCTCGTTTAGAC ACTGTTCTCAAAGAGAAACTCCCAACTGCCCCTCATGACAATAAGGAGGACAACATGCCTAAGGCAGTCTCTGGCTGTGATCAGAAAAGATTGCTTGTTT TTGACCAGTCAGGTGATCAAACAACTTTGATCTTTAGTTCTGGAGTTGGGACTCCTGTCCAGTGCTTGAAGTCTTGGATACCAAAACCAACAGTTGGCTT TGATTTGAATAGGGAAATTCCTGGGGCTAAAGGTCAAAATTTTCATTTAGGACCAATCGCAAATGATGAATTTGTTGAAGATGATGGGATTGATATGCAT GAGGACACTGAAGAACTGAATGCCTTACTTTACTCGGATGATGGTAGTGTTTGCTCTGAGGATGAAGTCACCAGTACAGGTCATTCACCTAGTACAATGA CAACTCATGATAGGCGAGATTGGTTTGATGGAAGCGCAGAAGAGGTTGCTAGTTCTAATGGTTCAAACAAAAAGAGAAAGCTGTTTGATGGAGGCTATAC AGATGCTCCATCACTCAAGGACACAGCTACTTCTGTAAAACCCACTAGATGTTTTGGGCACGAGGAAGATGTAGAATCCAGGTGTGACAATGGCACCAAT TCTTTGTCACATGAAATGGGTTCAGAATCAGGCAACAAGAGGATGAGAAAAGAGAATATTCGTGAGACAATGAGCATTCTCCAGAACCTCATTCCAGGTG GAAAGGGCAAGGATGCAATTGTTGTTCTTGAAGAAGCAATTCAATACTTGAAGTCATTGAAGTTCAAAGCGAAAGCTTTAGGACTTGATGCTCCATGA
AA sequence Show only first row Show all	>Potri.005G158100.1 pacid=42804529 polypeptide=Potri.005G158100.1.p locus=Potri.005G158100 ID=Potri.005G158100.1.v4.1 annot-version=v4.1 MGEDWGSLFPQQRFNWQSPNSNYLDASLAFGQQNTLPLLMDPNTNMVFTNGIGYPFTELLPSQASQENEPRGWFHGLPHFRQALMPPSNSVHKERRPRLD TVLKEKLPTAPHDNKEDNMPKAVSGCDQKRLLVFDQSGDQTTLIFSSGVGTPVQCLKSWIPKPTVGFDLNREIPGAKGQNFHLGPIANDEFVEDDGIDMH EDTEELNALLYSDDGSVCSEDEVTSTGHSPSTMTTHDRRDWFDGSAEEVASSNGSNKKRKLFDGGYTDAPSLKDTATSVKPTRCFGHEEDVESRCDNGTN SLSHEMGSESGNKRMRKENIRETMSILQNLIPGGKGKDAIVVLEEAIQYLKSLKFKAKALGLDAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.005G158100 [exp]	0	1
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	3.16	0.6840
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.007G112800 [exp]	8.00	0.6786
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175500 [exp]	10.00	0.5937	Pt-PT2.7,PtrPht1-6
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	12.12	0.6363	Pt-IAA8.4
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.006G222200 [exp]	18.00	0.5828
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.006G106500 [exp]	21.54	0.6094
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	21.63	0.6380
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	23.81	0.6319
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	24.08	0.6498
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Potri.009G027600 [exp]	30.98	0.5209	MBD906

Compare expression of checked genes

Potri.005G158100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.