Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10940 1080 / 0 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT3G45620 151 / 6e-39 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G38480 130 / 7e-32 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35140 125 / 3e-30 Transducin/WD40 repeat-like superfamily protein (.1) AT5G49430 55 / 3e-07 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT3G49660 54 / 3e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 53 / 9e-07 transducin family protein / WD-40 repeat family protein (.1.2) AT2G21390 52 / 1e-06 Coatomer, alpha subunit (.1) AT2G47410 52 / 1e-06 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT4G02730 51 / 2e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G103132 [exp] 412 / 4e-140 AT5G10940 390 / 2e-132 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103066 [exp] 256 / 5e-81 AT5G10940 209 / 4e-64 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G139000 [exp] 142 / 5e-36 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G178700 [exp] 128 / 3e-31 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G103216 [exp] 102 / 2e-25 AT5G10940 91 / 4e-22 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 54 / 1e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 54 / 2e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G121100 [exp] 54 / 7e-07 AT2G47410 1507 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) Potri.008G002700 [exp] 53 / 8e-07 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040538 [exp] 326 / 2e-107 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10040537 [exp] 216 / 5e-66 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10033290 [exp] 149 / 2e-38 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034751 [exp] 146 / 2e-36 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10025088 [exp] 132 / 1e-32 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023993 [exp] 132 / 2e-32 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 56 / 5e-08 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 55 / 9e-08 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012706 [exp] 55 / 2e-07 AT5G16750 1144 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10001301 [exp] 55 / 3e-07 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.005G158300.8 pacid=42802459 polypeptide=Potri.005G158300.8.p locus=Potri.005G158300 ID=Potri.005G158300.8.v4.1 annot-version=v4.1 ATGGATAATTACGGTTTTCACGATGGTAATATCTGTAATATGTTGGAGAGCAGACATCGCCCTGATGTTAATCACAGTTTACAGATGCATTCCTCACTGA TTCGGAGACTCTCCCAAGAAAGAGAACTGGAGGGGCATCAGGGTTGTGTCAATTCGATAGCCTGGAATTCTAAAGGTTCGCTCTTGATTTCTGGATCAGA TGACACACGGATGAATATTTGGAACTACGCTGGTCGAAAGCTTTTGCATTCTATAGATACTGGGCATTCTGCAAATATATTCTGCACTAAATTTGTTCCT GAAACATCTGATGAGCTTGTGGTTGCTGGAGCCGGAGATGCAGAAGTTCGCTTGTTTAATTTGTCTCGCTTGAGTGGAAGGAGTCCTGATGATAATTCTA TTGCTCCATCAGCACTGTATCAATGTCATACAAGAAGAGTGAAAAAATTAGCTGTTGAAGTTGGAAACCCCAACGTGGTCTGGAGTGCAAGTGAAGACGG AACACTTAGACAGCATGATTTTCGGGAGGGTGCTTCATGCCCTCCAGCAGGATCTTCCCATGAATGTCGCAATATTCTGCTTGACTTGCGGTCTGGAGCA AAGAGGTCATTAGCAGATCCACCTAAGCAAACCCTTGCTCTGAGATCTTGTGATATCAGTACCAGTCGGCCTCATTTGCTCCTGGTTGGTGGGAGTGATG CCTTTGCTCGATTATATGATAGACGGATGCTACCTCCACTGACTTCCTGCAGGAAAAGGATGTCCCCGCCACCTTGTGTTAACTATTTCTGCCCAATGCA CCTTTCTGAGCGTGGACGTTCAAGCTTGCACCTTACTCATGTTACATTTAGTCCAAATGGGGATGAGGTTCTCCTAAGTTATAGCGGAGAACATGTATAC CTAATGAATGTCAATCACAGTGGGGGCACTGCAGTGCGATATACTACTGGAGATACTTCAAAATTGATGACCTTCGCCCCTACACTCAATGGGCTAGAGC TACAACCGCTACCATCTTGTGTATTCAAACGTCAGAGTCATTCCAAAACCAATGGTTCTTCCATGCTTGAGAAGTGTAGAAGGCTGGTTCAAATTGCTGA AAAATCCTTAGAGGAAGGGACATGTTATTTCTATGGAATTGAAGCCTGCAATGAAGTTTTGGATGGCCATGGTCGTGTTATTGGCCCAACGCTTAGGCAT GAATGTCTCTGCATTCGTGCAGCCTTGTTGCTTAAGAGGAAATGGAAAAACGATGTTCACATGGCCATAAGAGATTGTTTTAATGCTCGCAGAATTGACA GTTCGTCCTTCAGAGCCCTCTATTATATGTCTGAAGCTTTGTCACGGCTGGGAAAACATAAGGAAGCTCTAGAATTCTCCATTGCTGCCCAATGTTCAGC ACCAGGAAATACTGAAGTAGCAGTATTGATGGAGGATATAAGAAAGAATCTTGCTACAGCTGAAGCTGGAAAAAGTAGTAAGGAAAATGACGGGGCAACA AGGTCTGAAACCCGAAACGGACGAGCATTGTCATTGAGTGATATACTCTATCACTCAGAGGCAAATAGTGAAGCTTCACATGATGGTCCAGGGTCTGATA GAGAAGATTCTGACTATGATGAGGAGCTGGAGTTGGACTTTGAAACATCAGTATCAGGTGATGAAGGGCGTGATGTTGAACCAAACATTCTTCATGGAAG TTTGAATCTCAGGATACATAGGAAAGGTGATTCAGCTAGAGATTCAAGCTGTACAAATGGTTCGTGTGGGTCGCCTTCATCATCACAAAATGATCGAACA CCTTATCAGCCGGAGACTGTCATTGATATGAAGCAGAGATATGTTGGCCACTGTAATGTTGGGACTGATATAAAACAGGCTAGTTTTCTTGGGCAAAGAG GTGATTATGTGGCCAGTGGAAGTGATGATGGTAGATGGTTTATTTGGGAAAAGCAAACTGGTAGATTGATAAAAATGCTTCTTGGAGATGAGGCTGTTGT GAACTGCATCCAGTGTCACCCATTTGATTGTGTTGTGGCAACCAGTGGTATTGATAACACCATAAAGATTTGGACTCCAAGTGCTTCAGTCCCATCGATA GTGGCTGGGGGAGCAGCAGGACCTGAAACTTCTAATGTGTTAGAAGCCATGGAAAGCAACCAGCGAAGATTATGCCATAATCGTGAAGCAATCCTTTGCA GCCCTTTTGAGCTTCTAGAACGGTTTCGGATGCATGAATTCACTGAAGGAACTTTGCACCCTTTTGAGTGTGCTCAGAGCTAA
AA sequence Show only first row Show all	>Potri.005G158300.8 pacid=42802459 polypeptide=Potri.005G158300.8.p locus=Potri.005G158300 ID=Potri.005G158300.8.v4.1 annot-version=v4.1 MDNYGFHDGNICNMLESRHRPDVNHSLQMHSSLIRRLSQERELEGHQGCVNSIAWNSKGSLLISGSDDTRMNIWNYAGRKLLHSIDTGHSANIFCTKFVP ETSDELVVAGAGDAEVRLFNLSRLSGRSPDDNSIAPSALYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREGASCPPAGSSHECRNILLDLRSGA KRSLADPPKQTLALRSCDISTSRPHLLLVGGSDAFARLYDRRMLPPLTSCRKRMSPPPCVNYFCPMHLSERGRSSLHLTHVTFSPNGDEVLLSYSGEHVY LMNVNHSGGTAVRYTTGDTSKLMTFAPTLNGLELQPLPSCVFKRQSHSKTNGSSMLEKCRRLVQIAEKSLEEGTCYFYGIEACNEVLDGHGRVIGPTLRH ECLCIRAALLLKRKWKNDVHMAIRDCFNARRIDSSSFRALYYMSEALSRLGKHKEALEFSIAAQCSAPGNTEVAVLMEDIRKNLATAEAGKSSKENDGAT RSETRNGRALSLSDILYHSEANSEASHDGPGSDREDSDYDEELELDFETSVSGDEGRDVEPNILHGSLNLRIHRKGDSARDSSCTNGSCGSPSSSQNDRT PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYVASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCIQCHPFDCVVATSGIDNTIKIWTPSASVPSI VAGGAAGPETSNVLEAMESNQRRLCHNREAILCSPFELLERFRMHEFTEGTLHPFECAQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	4.12	0.7029
					Potri.016G130201 [exp]	4.89	0.7008
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	6.32	0.6693
AT5G54585			unknown protein		Potri.001G409600 [exp]	7.48	0.6354
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.013G154900 [exp]	8.36	0.6636
AT1G50140			P-loop containing nucleoside t...		Potri.007G069800 [exp]	12.24	0.7029
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.008G078200 [exp]	14.49	0.6160
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G068400 [exp]	23.32	0.6096	Pt-CIPK24.1
AT1G67190			F-box/RNI-like superfamily pro...		Potri.004G203300 [exp]	24.37	0.6487
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	26.73	0.6281

Compare expression of checked genes

Potri.005G158300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.