Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02070 57 / 8e-11 unknown protein AT3G60520 51 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G142600 [exp] 60 / 9e-12 AT3G60520 138 / 4e-43 unknown protein Potri.014G058300 [exp] 57 / 7e-11 AT3G60520 134 / 2e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015899 [exp] 124 / 9e-36 AT1G02070 58 / 9e-11 unknown protein Lus10009267 [exp] 122 / 7e-35 AT1G02070 59 / 3e-11 unknown protein Lus10028179 [exp] 47 / 6e-07 AT3G60520 113 / 2e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G158400.1 pacid=42802918 polypeptide=Potri.005G158400.1.p locus=Potri.005G158400 ID=Potri.005G158400.1.v4.1 annot-version=v4.1 ATGACAGCAAGCAAAGGAGGTACTTCGTCATCGCAATCAAGCCCTGAATGTTGCATGTGTGGCGACTGTGGTCTTCCTCATGAGCTTTTCCAGTGCAAAG TCTGCCAATTCAGATCTCAACACAGATATTGTAGCAACCTGTATCCAAAAGCAGAGTCTTACCAAGTCTGCAATTGGTGTCTGAGCCATGACACCAAAGA AAAATCACAGAATTCTTCAAATTCTTCATCATCAAATAAAAATAACAGCGAAGATGACAGCAGGAACAACAAGAAAAAGAACGGTGACAATCAAGCAGGC CCGTCAAAGAACCATAGAGGAACTTTGCGGTTGCAAATCAATAGCCCCATCAAGAAACAAAGGTCGCCAGAGAGATCACCATCAACCCGAAGGAGACTAA TCACAAATGGCAAATTGGAGGAGAAGCTTAGAAGGACAAGATCCGAGGAGATGTCAAACAATGGGTTCACAAAACAAGTGTTTAGAAATAAGGTGAGAAG GTATAAGCTCTTAGACGAGGTTTCAAGTTGA
AA sequence Show only first row Show all	>Potri.005G158400.1 pacid=42802918 polypeptide=Potri.005G158400.1.p locus=Potri.005G158400 ID=Potri.005G158400.1.v4.1 annot-version=v4.1 MTASKGGTSSSQSSPECCMCGDCGLPHELFQCKVCQFRSQHRYCSNLYPKAESYQVCNWCLSHDTKEKSQNSSNSSSSNKNNSEDDSRNNKKKNGDNQAG PSKNHRGTLRLQINSPIKKQRSPERSPSTRRRLITNGKLEEKLRRTRSEEMSNNGFTKQVFRNKVRRYKLLDEVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02070			unknown protein		Potri.005G158400 [exp]	0	1
					Potri.008G061600 [exp]	6.55	0.9483
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	11.35	0.9450
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G011132 [exp]	14.69	0.9478
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	16.24	0.9355	PtrProT5
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	16.61	0.9097
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.003G076800 [exp]	18.30	0.9163
AT4G17350			Plant protein of unknown funct...		Potri.001G156700 [exp]	23.21	0.9139
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Potri.001G404100 [exp]	26.94	0.9291	Pt-ATNAC3.1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G121100 [exp]	27.71	0.9058
AT4G32250			Protein kinase superfamily pro...		Potri.006G255700 [exp]	28.24	0.9294

Compare expression of checked genes

Potri.005G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.