Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28390 396 / 5e-134 Protein kinase superfamily protein (.1.2) AT3G51990 301 / 3e-98 Protein kinase superfamily protein (.1) AT3G59420 233 / 2e-67 ACR4 crinkly4 (.1) AT5G23170 218 / 1e-66 Protein kinase superfamily protein (.1) AT3G24550 207 / 2e-59 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 199 / 2e-57 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70450 194 / 5e-57 Protein kinase superfamily protein (.1) AT1G70460 201 / 1e-56 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G47850 201 / 2e-56 CCR4 CRINKLY4 related 4 (.1) AT1G52290 195 / 3e-56 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G260800 [exp] 361 / 5e-121 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1) Potri.009G055200 [exp] 360 / 8e-120 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.003G010300 [exp] 270 / 2e-86 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.004G221800 [exp] 269 / 8e-86 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 228 / 1e-65 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 225 / 1e-64 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.019G078300 [exp] 213 / 1e-60 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 205 / 8e-58 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.004G105200 [exp] 200 / 2e-56 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039770 [exp] 458 / 7e-158 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10016371 [exp] 356 / 4e-118 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10000764 [exp] 224 / 2e-64 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 223 / 8e-64 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10029170 [exp] 208 / 5e-59 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10012995 [exp] 189 / 3e-56 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10023645 [exp] 197 / 1e-55 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10017273 [exp] 196 / 2e-55 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10041426 [exp] 189 / 4e-55 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028407 [exp] 192 / 5e-55 AT2G14510 258 / 1e-76 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G158600.1 pacid=42803188 polypeptide=Potri.005G158600.1.p locus=Potri.005G158600 ID=Potri.005G158600.1.v4.1 annot-version=v4.1 ATGGGCTATTTCTCTTGCAATGCAGAGTCTGCAATTGCAACCTGCGATCCTTCCAACTGGGATTCTTATCGCAAGCGAAGAAGAAACAAGAACCAAACCA AACCAAATAAACCAATCAAAATCAGAGAGTTCAGTTACACTGAACTTGTCAAAGCCACCAATACTTTCTCCGCAGAAACCTTCCTTGGAAAAGGCAGCCA TGGAACCGTTTATAAAGCCTTTCTCGACCAAGGCAAGCTCATAGCCGCCGTTAAAAAGACAACCCATCAAACAAATTTCTGCAACAGCTATAACTCTAAC TGCGCGACAGTTCCTCCGGCAGACAACGAGATTGAAACTCTATCCAGAGTTCAGCATCCAAGATTGGTAAACCTCCTTGGTTTCTGTGTTGATCCTACAG GCCGTAAACTACTTGTCGTCGAGTACATGCCAAACGGCTCATTATACGATCTTCTACATTCCAGTTCTCGACCTCCCGGTTGGACCAGGCGGGTTCGGTT CGCATTACAAATAGCAAAAGCGGTCCAGGCTCTCCACGCCTCTAACCCGCCGGTGATTCACAGAGACATAAAATCATCAAATGTGCTGATCGATGAATAC TGGAAAGCGAGGTTAGGTGATTTTGGTCTTGCCTTAAGAGGACACGTGGAAGACGTTCATGTGAAGTGCACGCCACCGGCGGGGACGTTAGGGTATCTTG ATCCAGCCTATCTTGCACCAGGGGATTTAAGCGCCAAGAGTGACGTGTTCAGTTTTGGGATTCTGTTGTTAGAGATCATTAGTGGCAGAAATGCGATTGA TGTAAATTACAGTCCTCCTTCAGTGGTTGATTGGGCGGTTCCCTTAATTAAAAAAGGTGACTTGGGGGCAATATGTGATAACCGGGTGGCTTCGATGCCC GACCCGGTTGTGATCCGGAATTTGTCTGTTTTGGCTGCCAGGTGCGTGAGATCCACGGCCGAAAAGCGTCCAGGAATGGCGGAGGTGGTTGAAGGATTGA AACTTGTTAATAGAAGAATCCGTGCGCCGCCTATTTGGAATCACCTGAGAAGGCGCGTGGGGCGCGTGGAGGAGGGGGGTGTGGTCGTTGATAGAAGTGA AGAGGAGGTCAGTGTCAACGTTCACAAGACGGTTAAAGTAGGAAGCAGGAGAAATAGTAAAGTATCGAGTGTTTCAAGGGTAGAGTATGGAAGCGAAACG ATTGGTTCGGTAGGGGATAGAGTGATTAGGTCGAAATCTATTGGTTCTTTTGGTGAGATAAAGATGGGGTCTGATTATTCTTGGAGAAAACCTGGAGGGG TGGCAGTGAAAATGCCTGTGGTGAAATTAAGCAAGTCGAGGTCTATGGGGGTATTGCATGGTCCTAGGCTAGTACATTACAAGAAGAGAGGATTTTTCTT AGAATTTGGAACAGAAAGTGATTCAAGGGAATATGATGTTGGCCCTATGCGAAACATGTTTATTGGTTTGGATGAGAAATTGGAGCAAAAGATACAAGAG AAGCCGTTGGTGTCTAAAAATTAA
AA sequence Show only first row Show all	>Potri.005G158600.1 pacid=42803188 polypeptide=Potri.005G158600.1.p locus=Potri.005G158600 ID=Potri.005G158600.1.v4.1 annot-version=v4.1 MGYFSCNAESAIATCDPSNWDSYRKRRRNKNQTKPNKPIKIREFSYTELVKATNTFSAETFLGKGSHGTVYKAFLDQGKLIAAVKKTTHQTNFCNSYNSN CATVPPADNEIETLSRVQHPRLVNLLGFCVDPTGRKLLVVEYMPNGSLYDLLHSSSRPPGWTRRVRFALQIAKAVQALHASNPPVIHRDIKSSNVLIDEY WKARLGDFGLALRGHVEDVHVKCTPPAGTLGYLDPAYLAPGDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWAVPLIKKGDLGAICDNRVASMP DPVVIRNLSVLAARCVRSTAEKRPGMAEVVEGLKLVNRRIRAPPIWNHLRRRVGRVEEGGVVVDRSEEEVSVNVHKTVKVGSRRNSKVSSVSRVEYGSET IGSVGDRVIRSKSIGSFGEIKMGSDYSWRKPGGVAVKMPVVKLSKSRSMGVLHGPRLVHYKKRGFFLEFGTESDSREYDVGPMRNMFIGLDEKLEQKIQE KPLVSKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28390			Protein kinase superfamily pro...		Potri.005G158600 [exp]	0	1
AT5G50710			unknown protein		Potri.012G101800 [exp]	3.46	0.9012
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.005G068900 [exp]	7.74	0.8892	AAP1.1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.016G099200 [exp]	8.06	0.9061
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	10.58	0.9041	HSP70.7
AT3G06130			Heavy metal transport/detoxifi...		Potri.005G036300 [exp]	10.95	0.8977
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G134500 [exp]	11.40	0.8986	CYP721.5
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.017G073700 [exp]	13.26	0.8658
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.010G074201 [exp]	19.07	0.8988
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	24.00	0.8940
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	24.28	0.8946

Compare expression of checked genes

Potri.005G158600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.