Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49980 934 / 0 AFB5 auxin F-box protein 5 (.1) AT4G24390 905 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT1G12820 605 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 592 / 0 AFB2 auxin signaling F-box 2 (.1) AT3G62980 556 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G03190 551 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT2G39940 296 / 4e-92 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT2G25490 62 / 1e-09 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 59 / 7e-09 F-box family protein (.1) AT4G15475 59 / 9e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102700 [exp] 1167 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.004G033900 [exp] 610 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 604 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 586 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 586 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.002G207800 [exp] 566 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.014G134800 [exp] 560 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.008G064400 [exp] 288 / 1e-88 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 283 / 8e-87 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018426 [exp] 607 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10020086 [exp] 597 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 593 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10006738 [exp] 593 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018425 [exp] 552 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 543 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035161 [exp] 493 / 2e-169 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 424 / 2e-143 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 349 / 3e-115 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10014836 [exp] 301 / 1e-93 AT2G39940 827 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G159300.2 pacid=42802777 polypeptide=Potri.005G159300.2.p locus=Potri.005G159300 ID=Potri.005G159300.2.v4.1 annot-version=v4.1 ATGATCACCAACAAAAAGCCTAGATCATCAGATACTGACTCTAATTACATGAGAGACGATCGAACTGAAATGTCCGAAGACGACGACAGATCTCCTCCCT CCAACTCAATCACCCATGATTCTAGCCCAACCCGGACCTGCACCCCCGGGCCCGGGTCGGGTTCATCTTCAGTCCCCGAATACTTAGCTCCGTACCCGGA CCAAGTCCTTGAAAACGTCTTAGAAAACGTTCTCTGGTTCTTGACCTCACGTAAGGACCGAAACGCTGCGTCATTGGTTTGTAGGTCATGGTACCGGGTC GAGGCTCTGACCCGATCCGATTTGTTCATCGGTAACTGCTACGCGGTGTCTCCAAAGCGAGCCATGTCGCGGTTTACCCGAATCAGGTCGGTGACGCTGA AAGGGAAGCCAAGGTTTGCTGATTTTAACCTGATGCCGCCTAATTGGGGAGCCCACTTCGCGCCTTGGGTCTCTGCTATGGCAATGACTTACCCTTGGTT AGAGAAGGTTCATTTGAAGAGGATGTCAGTGACGGATGATGATCTGGCTTTGCTTGCGGAGTCGTTTTCGGGATTCAAAGAGCTCGTGCTTGTTTGTTGT GATGGGTTTGGTACTAGTGGACTTGCTATTGTCGTTAGCAGGTGCAGGCAACTCAAAGTGCTTGATCTGATTGAATCAGAGGTATCAGATGATGAAGTGG ATTGGATTTCGTGTTTTCCAGATACCGAAACATGCCTCGAATCCCTGATTTTTGATTGTGTAGATTGTCCCATTGATTTTGATGCACTGGAGAGGCTGGT GGCTAGGTCCCCATCACTTAAGAAACTTAGGCTGAACCGATATGTTTCGATTGGACAACTTTACCGTCTAATGGTTCGAGCTCCACACCTCACACATCTT GGGACAGGCTCTTTTAGCCCATCAGAGGATGTAGCTCAGGTTGAACAGGGACCGGATTATGCTTCTGCGTTTGCTGCTTGCAAATCCTTAGTCTGCCTAT CTGGATTCAGGGAACTCATTCCAGATTACTTGCCTGCAATAAACCCTGTATGTGCCAATCTCACTTCACTGAACTTTAGTTATGCAGAAGTTAGTGCAGA ACAGCTCAAACCAATCATAAGCAATTGCCACAAGCTTCAGATTTTCTGGGTTCTTGATTCAATATGCGATGAAGGACTACAGGCTGTGGCTGCAACATGC AAGGAGCTACGAGAGCTTCGGGTCTTCCCTGTTGACCCTAGGGAGGACATTGAGGGCCCTGTTTCTGAAGTGGGCCTCCAAGCAATTTCAGAGGGTTGCA GGAAGCTTCAATCTATTTTGTATTTTTGCCATCGGATGACAAATGCTGCTGTTGTAGCTATGTCAAAGAACTGCCCAGACCTTGTGGTCTTCCGTCTCTG CATAATGGGGCGTCACCAGCCTGATCATGTCACTGGAGAACCTATGGATGAAGGATTTGGAGCCATTGTCAAGAATTGCAAGAAGCTCACTCGACTCGCG GTATCTGGTTTATTGACTGATAGAGCTTTTGCTTATATTGGAAAATATGGGAAAATTGTAAGGACCCTATCGGTTGCTTTTGCTGGAGATAGTGACATGG GGCTGAAATATGTGCTTGAGGGTTGTCCCAGATTGCAGAAGCTTGAGATTAGGGACAGTCCATTCGGGGATGCAGCTCTACTTTCTGGTCTGCACCACTA TTACAATATGAGATTCCTTTGGATGTCTGCTTGCAAGTTGTCTCGCCAAGGCTGCCAACAGATTGCTCAAGCGTTGCCTCGGCTGGTGGTGGAAGTGATT AAGCATGAAGATAATGTGGACGTGGATGAGTATGTTGATACGTTGTATATGTACCGGTCTCTTGAAGGGCCAAGAGATGATGCGCCTATATTTGTTTCCA TCTTGTAG
AA sequence Show only first row Show all	>Potri.005G159300.2 pacid=42802777 polypeptide=Potri.005G159300.2.p locus=Potri.005G159300 ID=Potri.005G159300.2.v4.1 annot-version=v4.1 MITNKKPRSSDTDSNYMRDDRTEMSEDDDRSPPSNSITHDSSPTRTCTPGPGSGSSSVPEYLAPYPDQVLENVLENVLWFLTSRKDRNAASLVCRSWYRV EALTRSDLFIGNCYAVSPKRAMSRFTRIRSVTLKGKPRFADFNLMPPNWGAHFAPWVSAMAMTYPWLEKVHLKRMSVTDDDLALLAESFSGFKELVLVCC DGFGTSGLAIVVSRCRQLKVLDLIESEVSDDEVDWISCFPDTETCLESLIFDCVDCPIDFDALERLVARSPSLKKLRLNRYVSIGQLYRLMVRAPHLTHL GTGSFSPSEDVAQVEQGPDYASAFAACKSLVCLSGFRELIPDYLPAINPVCANLTSLNFSYAEVSAEQLKPIISNCHKLQIFWVLDSICDEGLQAVAATC KELRELRVFPVDPREDIEGPVSEVGLQAISEGCRKLQSILYFCHRMTNAAVVAMSKNCPDLVVFRLCIMGRHQPDHVTGEPMDEGFGAIVKNCKKLTRLA VSGLLTDRAFAYIGKYGKIVRTLSVAFAGDSDMGLKYVLEGCPRLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSRQGCQQIAQALPRLVVEVI KHEDNVDVDEYVDTLYMYRSLEGPRDDAPIFVSIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.005G159300 [exp]	0	1
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Potri.001G031400 [exp]	2.64	0.7993	Pt-RBR1.1
AT5G19420			Regulator of chromosome conden...		Potri.009G071800 [exp]	2.82	0.7794
AT5G15080			Protein kinase superfamily pro...		Potri.008G194700 [exp]	12.32	0.7443
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	18.33	0.7733
AT2G41890			curculin-like (mannose-binding...		Potri.016G053800 [exp]	19.28	0.6864
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Potri.006G170400 [exp]	23.15	0.6519
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Potri.003G202300 [exp]	27.42	0.6960
AT5G53620			unknown protein		Potri.015G006700 [exp]	27.56	0.7406
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Potri.013G000300 [exp]	28.46	0.7573	PHYC.1,phya
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.018G039500 [exp]	28.72	0.7607

Compare expression of checked genes

Potri.005G159300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.