Plant FIBer expression Database

Potri.005G159500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49970 143 / 7e-41 PDX3, ATPPOX HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G102600
[exp]
176 / 5e-53 AT5G49970 761 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002098
[exp]
151 / 6e-43 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
Lus10000833
[exp]
149 / 5e-42 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
PFAM info
Representative CDS sequence
>Potri.005G159500.2 pacid=42805567 polypeptide=Potri.005G159500.2.p locus=Potri.005G159500 ID=Potri.005G159500.2.v4.1 annot-version=v4.1
ATGACTGGTGAAACTTCTTTCATTGATGGAATTAGTTTACCTAACCATTACTTGTTATGTTACCATTTGCAACAGCTCATCAAGAATTGTGTTGTTGAAA
CGAGTCGACAAGGATGGGTTTGTTTGGTTCGAGTGGAAGGATCTGTGCAGAAAGTTCCTGATGAGGAATCTGAACAGTACATATATAGCTGTCATCAAGG
AAGTGAAATTGGAGCAATAGTTAGCAATCAGAGTACTATAATTCCTGGAACGCATGTTCTACACCAAACATACAAAGAATTAGAGGAAAAATATTCTGAT
GGGTGGTGCAGAAGTTTGATTCCAAAACCTAAACACCGGGGAGGGTATAGGTTTAAACCACAACTTTTCGAGTTTTGGCAAGGACAACATTCTCATTTGC
ATGACAGGTTGCAATATACTCAAGAAATCAACGGCAAGCTAGTTTGGAAGATTGTGTGGTTGGCTCCGCTCCCTGACTAG
AA sequence
>Potri.005G159500.2 pacid=42805567 polypeptide=Potri.005G159500.2.p locus=Potri.005G159500 ID=Potri.005G159500.2.v4.1 annot-version=v4.1
MTGETSFIDGISLPNHYLLCYHLQQLIKNCVVETSRQGWVCLVRVEGSVQKVPDEESEQYIYSCHQGSEIGAIVSNQSTIIPGTHVLHQTYKELEEKYSD
GWCRSLIPKPKHRGGYRFKPQLFEFWQGQHSHLHDRLQYTQEINGKLVWKIVWLAPLPD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49970 PDX3, ATPPOX HOMOLOG OF YEAST PYRIDOXINE AU... Potri.005G159500
[exp]
0 1
AT5G53950 NAC ATCUC2, CUC2, A... CUP-SHAPED COTYLEDON 2, Arabid... Potri.001G396300
[exp]
12.08 0.8023
AT3G17380 TRAF-like family protein (.1) Potri.008G199400
[exp]
37.68 0.7937
Potri.010G199150
[exp]
39.24 0.7934
Potri.006G216950
[exp]
40.98 0.7925
AT3G45020 Ribosomal L18p/L5e family prot... Potri.004G214400
[exp]
43.04 0.7857
AT3G30387 Protein of unknown function (D... Potri.004G110681
[exp]
43.95 0.7895
AT5G24270 ATSOS3, CBL4, S... CALCINEURIN B-LIKE PROTEIN 4, ... Potri.015G013200
[exp]
49.95 0.7871
Potri.001G338300
[exp]
54.91 0.7697
AT5G64667 IDL2 inflorescence deficient in abs... Potri.002G070401
[exp]
60.79 0.7365
AT2G33550 Trihelix Homeodomain-like superfamily p... Potri.015G105800
[exp]
61.02 0.7126

Potri.005G159500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.