Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28210 479 / 2e-167 ATJ1 DNAJ heat shock family protein (.1.2) AT5G48030 264 / 3e-83 GFA2 gametophytic factor 2 (.1) AT2G22360 188 / 2e-54 DNAJ heat shock family protein (.1) AT1G80030 187 / 2e-53 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 185 / 3e-53 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 174 / 1e-48 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G44110 100 / 8e-23 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 100 / 1e-22 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT2G20560 92 / 4e-20 DNAJ heat shock family protein (.1) AT1G59725 89 / 2e-19 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065500 [exp] 268 / 7e-85 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 266 / 3e-84 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.007G094900 [exp] 186 / 1e-53 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 186 / 2e-53 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 182 / 1e-51 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 181 / 1e-50 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.008G018800 [exp] 121 / 6e-30 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 117 / 2e-28 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 110 / 3e-26 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020949 [exp] 473 / 7e-166 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10027634 [exp] 279 / 4e-89 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 271 / 6e-86 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 269 / 3e-85 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 268 / 7e-84 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10000631 [exp] 190 / 7e-55 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 189 / 1e-54 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 181 / 4e-51 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 181 / 6e-51 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031908 [exp] 177 / 1e-49 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G160200.2 pacid=42802584 polypeptide=Potri.005G160201.1.p locus=Potri.005G160200 ID=Potri.005G160200.2.v4.1 annot-version=v4.1 ATGCGAAGTTACTGCTGGCTAGGACTATGCCGGCGGCATTTGCTATCATCCACCGCCGTTGATCGTGGAGATCGCCTTCGAAAAGTCTCGTCGTTTTCTG ATCGATTTTTGAACAGTTGCGGCCATTCTATTAGCAAACCTCCTGATTTCGGAACTACAGAAACTCATTTGATTAAACGGAGATACATTCATGCCACAGG AAGTTGTAATGCTAAGGAACGCAGTTTTTACGAAATTCTTGGTGTTTCTGAAAATGCTAGCAGAGAAGATATCAAAACGGCTTTTCATTTGCTTGCAAAG AAGTACCATCCGGATGCAAATAAAAATAGTGCTAGTGCGAAAAGGAAATTTCAAGAGATTAGGGAAGCCTACGAGACGCTGCAAGATTCTGAGAAGAGGG CACAATATGATGCGATGCGTACTGGAGGTTTGAATTATGGTGCTGATAGTGCTGAGGGATATGGTGCTGATGATGCAGCGGGATTTAGACATGGTGCTGG TAATGCAGGGGGATTTAGATATGCTTATCGAACTAATTTCTCTAATTCATTCCATAAAATATTCTCTGAGATCTTTGAAGATGAGGCCAATCATTTTGCA TCTGATATTCAGGTGGACCTAGTTCTCTCCTTTTCTGAATCTGCTAGAGGATGCACAAAGCATGTGACTTTTGATGCATATGTTCCGTGTGATTCTTGTG ATGGTCATGGCTATCCGGCAAATGCCAAAGCAAGCATTTGTCCTACTTGCAGAGGTGTAGGGAAAGTTACAATTCCTCCATTTACATCAACTTGCAGCCA TTGTAGAGGATTGGGCCGGATAATTAAGGAACACTGTACGTCATGTAGAGGATCAGGGGTTGTTGAAGGCATTAAGGATGTTAAAGTTACAATACCAGAA GGTGTGGGTTCTGGAGATACAATCCGTGTGCCAGAAGCTGGTAATACAGGGGGACGGGGAAGTCGATCTGGCAACTTATTCATTAATCTTAAGGTTGCTG ATGATCCTGTCTTTGCTAGAGAAGGTGCAGATGTTTATGTTGATGCTAATATTAGTTTTACACAAGCAATTCTTGGTGGTAAGGTTGAAGTACCAACATT GTCAGGGAAGACACAAGTAAATATACCAAAGGGAGTTCAGCCAGGTCAACTTGTGGTACTAAGAGGCAAAGGTCTATCAAAGCATGGTTTTCTTGTAGAT CATGGAGATCAATATGTGCGGTTTTGCATTAACTTCCCCAATGCAATTAATAAGCGCCAACATGCTATTTTGGAAGAATTTGCCAAGGAAGAGATAAATA ATGAAAATGACACTTCCAATGAAGGAAACTGGTGGCAGCAACTTCTTGAACGGGTGACGGATCCCAGGTTTATGCTAAAATTTTCTATGCTCATGCTAAT CCTGCTGTTCTTTAACAAAACCATGATTTGA
AA sequence Show only first row Show all	>Potri.005G160200.2 pacid=42802584 polypeptide=Potri.005G160201.1.p locus=Potri.005G160200 ID=Potri.005G160200.2.v4.1 annot-version=v4.1 MRSYCWLGLCRRHLLSSTAVDRGDRLRKVSSFSDRFLNSCGHSISKPPDFGTTETHLIKRRYIHATGSCNAKERSFYEILGVSENASREDIKTAFHLLAK KYHPDANKNSASAKRKFQEIREAYETLQDSEKRAQYDAMRTGGLNYGADSAEGYGADDAAGFRHGAGNAGGFRYAYRTNFSNSFHKIFSEIFEDEANHFA SDIQVDLVLSFSESARGCTKHVTFDAYVPCDSCDGHGYPANAKASICPTCRGVGKVTIPPFTSTCSHCRGLGRIIKEHCTSCRGSGVVEGIKDVKVTIPE GVGSGDTIRVPEAGNTGGRGSRSGNLFINLKVADDPVFAREGADVYVDANISFTQAILGGKVEVPTLSGKTQVNIPKGVQPGQLVVLRGKGLSKHGFLVD HGDQYVRFCINFPNAINKRQHAILEEFAKEEINNENDTSNEGNWWQQLLERVTDPRFMLKFSMLMLILLFFNKTMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28210		ATJ1	DNAJ heat shock family protein...		Potri.005G160200 [exp]	0	1
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	3.60	0.8628
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	5.65	0.8673
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.001G054400 [exp]	10.09	0.8886	CPN60.1
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.016G031900 [exp]	13.19	0.8145
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	13.26	0.8143
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.006G185200 [exp]	14.89	0.8018	UBP23.3
AT1G56400			F-box family protein (.1.2)		Potri.011G136200 [exp]	15.77	0.8879
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	20.09	0.8769
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.004G104800 [exp]	20.39	0.8478
AT5G22480			ZPR1 zinc-finger domain protei...		Potri.004G075600 [exp]	21.33	0.8740

Compare expression of checked genes

Potri.005G160200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.