Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PUP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 414 / 5e-145 ATPUP3 purine permease 3 (.1) AT1G28230 385 / 9e-134 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 377 / 2e-130 ATPUP2 purine permease 2 (.1.2) AT4G18220 176 / 5e-52 Drug/metabolite transporter superfamily protein (.1) AT1G30840 167 / 3e-48 ATPUP4 purine permease 4 (.1.2) AT4G18210 164 / 3e-47 ATPUP10 purine permease 10 (.1) AT4G18205 162 / 2e-46 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G18197 158 / 1e-44 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT2G24220 155 / 4e-44 ATPUP5 purine permease 5 (.1.2) AT4G18195 141 / 2e-38 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099600 [exp] 297 / 4e-99 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G147600 [exp] 191 / 3e-57 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352200 [exp] 172 / 2e-50 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.014G043900 [exp] 171 / 5e-50 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G352100 [exp] 171 / 1e-49 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.006G184900 [exp] 168 / 8e-49 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.003G156900 [exp] 132 / 9e-35 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 129 / 4e-34 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020950 [exp] 470 / 8e-167 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 425 / 1e-149 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10036465 [exp] 413 / 3e-144 AT1G28220 394 / 1e-136 purine permease 3 (.1) Lus10041133 [exp] 407 / 2e-142 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10035636 [exp] 369 / 2e-127 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10010757 [exp] 369 / 3e-127 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10020416 [exp] 367 / 2e-126 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10015832 [exp] 362 / 1e-124 AT1G28220 348 / 5e-119 purine permease 3 (.1) Lus10008212 [exp] 286 / 3e-94 AT1G28220 293 / 7e-97 purine permease 3 (.1) Lus10008714 [exp] 285 / 3e-94 AT1G28220 286 / 7e-95 purine permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF16913 [poplar] [flax] PUNUT Purine nucleobase transmembrane transport
Representative CDS sequence Show only first row Show all	>Potri.005G160300.1 pacid=42803218 polypeptide=Potri.005G160300.1.p locus=Potri.005G160300 ID=Potri.005G160300.1.v4.1 annot-version=v4.1 ATGGAGACCAAAGAAGAGACTCAAGGTAAAACAACCATGAAAAAAACCCTTCTCATCTTCAACTGCCTCATACTATCCATAGGAAACTGTGGTGGTCCTC TAATAATGCGCCTCTACTTCATCCATGGAGGCAAACGTATTTGGCTCTCTGCCTGGCTTGAAACGGGCGGTTGGCCCATCATTCTAATCCCCCTTGCCAT CTCCTACTTTCACCGCCGTGCAACCGATCCCACCACTAAACTCTTTTATATGAAACCTCCCTTGTTCATTGCTGCCGCCATCATTGGTGTCCTTACTGGT CTGGATGACTATCTTTACGCTTATGGTGTAGCCCGTCTTCCTGTTTCAACCTCTGCTCTGATTATTGCAACACAGCTAGCTTTCACAGCTGGTTTTGCTT TCCTTCTAGTCAAACAAAAGTTCACTTCTTATTCAATAAACGCTGTTGTTTTATTGACGGTGGGGGCTGGAGTATTGGCTATGCATACAGGTAGTGACAA GCCTGCTCATGAATCGAGTAGAGAGTATATACTGGGTTTTATCTTGACGCTTGTAGCTGCTGCTCTGTACGGCTTTATCATGCCGTTGGTGGAATTGACA TACAAGAAGTCCAGGCAGGAAATGAACTACACGCTTGTGATGGAGATTCAGATGATTATGTGTTTGCTTGCTACTGTCTTTTGTACCGTAGGAATGCTCA TTAACAAAGACTTCCAGGCGATTCCAAGAGAAGCAAGAAACTATGAGCTGGGAGAAGTCAAGTATTACGTGGTGATGGTGTGGAGTGCAATTATCTGGCA GTGTTTCTTCTTGGGAGCCATAGGAGTCATCTTTTGTGCCTCCTCTTTGCTATCCGGTATTATAATCACTGTTCTCCTTCCAGCCACTGAAATCCTAGCA GTTATTTTCTTCCAAGAGAAATTTCAAGTAGAAAAGGGTGTCGCTCTTGGACTCTCGCTTTGGGGCTTTGTTTCTTACTTCTATGGCGAGATGAAAGAAA ACAAGAAAAAGAAACCAGCAGCTCCGGAAACTTTGATGGCTCCAAGTAATAATCCGGTAGGAAATGTTTGA
AA sequence Show only first row Show all	>Potri.005G160300.1 pacid=42803218 polypeptide=Potri.005G160300.1.p locus=Potri.005G160300 ID=Potri.005G160300.1.v4.1 annot-version=v4.1 METKEETQGKTTMKKTLLIFNCLILSIGNCGGPLIMRLYFIHGGKRIWLSAWLETGGWPIILIPLAISYFHRRATDPTTKLFYMKPPLFIAAAIIGVLTG LDDYLYAYGVARLPVSTSALIIATQLAFTAGFAFLLVKQKFTSYSINAVVLLTVGAGVLAMHTGSDKPAHESSREYILGFILTLVAAALYGFIMPLVELT YKKSRQEMNYTLVMEIQMIMCLLATVFCTVGMLINKDFQAIPREARNYELGEVKYYVVMVWSAIIWQCFFLGAIGVIFCASSLLSGIIITVLLPATEILA VIFFQEKFQVEKGVALGLSLWGFVSYFYGEMKENKKKKPAAPETLMAPSNNPVGNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.005G160300 [exp]	0	1	PUP1.1
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.005G211800 [exp]	2.00	0.9466
					Potri.017G047400 [exp]	2.44	0.9435
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	4.69	0.8994
					Potri.007G113700 [exp]	5.19	0.9335
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.007G007900 [exp]	6.48	0.9099
AT5G44440			FAD-binding Berberine family p...		Potri.011G162940 [exp]	11.87	0.8549
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Potri.010G111000 [exp]	12.00	0.9080	MLP43.1
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114600 [exp]	12.64	0.9002
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076200 [exp]	12.72	0.8830
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G050900 [exp]	12.84	0.9178	MYB101.1

Compare expression of checked genes

Potri.005G160300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.