Plant FIBer expression Database

Potri.005G160500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G060700
[exp]
53 / 2e-07 AT5G48920 73 / 2e-15 tracheary element differentiation-related 7 (.1)
Potri.007G108100
[exp]
50 / 9e-07 AT5G48920 74 / 3e-16 tracheary element differentiation-related 7 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G160500.1 pacid=42803355 polypeptide=Potri.005G160500.1.p locus=Potri.005G160500 ID=Potri.005G160500.1.v4.1 annot-version=v4.1
ATGTCACTTGATTCTCTTAAGATGGCTTATCCATACTATTCTCCTCCACCTCCTTCGCCACCCCCACCACCACCAACCTCACAAGTATTGTGTAATCCTA
TAACGACATCACCTCCTCCCAAACACCACCGCCGACCTCCACCACACCCTCAACTTAAGCCACCACCACCTCCTCCCAAACACCACCACCGACCTCCACC
ACACCCTCAACTTAAGTCATCACCACCTCCTCCACGGTCGCCATCATACCAATACGATTGCAGACACCCACCTCTAACACCCGTTAAGGCTCCACCCTGT
CAAGATTTTGCACCTTCTCCATCCCCGTCCACCACTCCATATTCAAAGCCACCAACACCAACATCTACTGCCCCAACTCAACCGCCCTCTCACCGTAAGC
CAACACTACCTAAACCTTCATCACCGCTACCAAGCTACGCTCCTAGTCCAGCTCCACCATATGCATCGTCACCACCTAAACAGACTACTACGAGTCCAAC
ACCAATGCCCTCCCCTTATAAACCAACTCCACCTAAGCCTTCATCTCCACCAAGCCACATTGTTCCAGCACCAGAACCAACACCTACAGGTCACACACCA
ATGCCCTCCCCTTATAAACCAACTCCACCTAAGCCTTCATCTCCACCAAGCCACACTCCTGGTCCAGTTCCACCGCCAGAATCAACACCTACACGCCCAG
CACCAGTGCCCTCTCCTTATAAGCATACTCCACCTAAACCATCATATCCACCGAGCCACACTCCTGGTCCAGTTCCACCGCCAGAACCAACACCTACAGG
CCGAGCACCAGTGCCCTCTCCTTATAAGCATACTCCACCTAAACCATCATATCCACCGAGCCACACTCCTGGTCCAGTTCCACCGCCAGAACCAACACCT
ACACGCCCAGCACCAGTGCCCTCTCCTTATAAGCCTACTCCACCTAAACCATCATATCCACCGAGCCACACTCCTGGTCCAGTTCCACCGCCAGAACCAA
CACCTACACGCCCAGCACCAGTGCCCTCTCCTTATAAGCCTACTCCACCTAAACCATCATATCCACCGAGCCACACTCCTGGTCCAGTTCCTCCACCAGA
ACCAACACCTACACGCCCAGCACCAGTGCCCTCTCCCTATATGCCAGGTCCACCTCAACCATTAAAACCACCAAGCTACGCTCCTGGTTCAGCTCCACCA
CCGAAACTAGCATGGGCACCCTCTCCTGACAAGCCAACTTCACCTAAACCCCCACACGCAACACCACCAAGTTACCATGTTTCACCTCCAACCCCATTAA
ACGGTCCAGTTTCACCACCTAAATTACCTCCATATGCTACACCACCACAATATAATATCCCACCACCACCTAAACCTAGCTCAGCCCCACCAGTATATGC
TGCACCCCCAACTTTTAACTCGGTGCCACCATCGTCAAATGTTGTATCACCGCCTCCTGGAGGCAATCACACCACTGTCATTGTCGTGTGCGTTTCGCTT
GGTGGGGTGTTCTTCCTTGCATTCCTTTTGATTGGCCTCATTTGTTTGGCTAAGAAAAAGAAGAAACCAGTTATGGTTCCTGTAGCTCCAGTTTGTATTG
AAGAACATGAAGTAATTCAAGAAACCATTACTACAGGACAAAGTGAAGAAGAAACTGCGACAGTGTCTATGGAGGATGATGTGCGTATTCATGGAGTTTT
AGGTGTTGTTGGTTCTGGTAGTAGTTCGAATACGAGTTCTCCTAGTGGCCCTTCTTCTCCTTCTGAATCAGGCCGGCAACCCAAAGGTTAA
AA sequence
>Potri.005G160500.1 pacid=42803355 polypeptide=Potri.005G160500.1.p locus=Potri.005G160500 ID=Potri.005G160500.1.v4.1 annot-version=v4.1
MSLDSLKMAYPYYSPPPPSPPPPPPTSQVLCNPITTSPPPKHHRRPPPHPQLKPPPPPPKHHHRPPPHPQLKSSPPPPRSPSYQYDCRHPPLTPVKAPPC
QDFAPSPSPSTTPYSKPPTPTSTAPTQPPSHRKPTLPKPSSPLPSYAPSPAPPYASSPPKQTTTSPTPMPSPYKPTPPKPSSPPSHIVPAPEPTPTGHTP
MPSPYKPTPPKPSSPPSHTPGPVPPPESTPTRPAPVPSPYKHTPPKPSYPPSHTPGPVPPPEPTPTGRAPVPSPYKHTPPKPSYPPSHTPGPVPPPEPTP
TRPAPVPSPYKPTPPKPSYPPSHTPGPVPPPEPTPTRPAPVPSPYKPTPPKPSYPPSHTPGPVPPPEPTPTRPAPVPSPYMPGPPQPLKPPSYAPGSAPP
PKLAWAPSPDKPTSPKPPHATPPSYHVSPPTPLNGPVSPPKLPPYATPPQYNIPPPPKPSSAPPVYAAPPTFNSVPPSSNVVSPPPGGNHTTVIVVCVSL
GGVFFLAFLLIGLICLAKKKKKPVMVPVAPVCIEEHEVIQETITTGQSEEETATVSMEDDVRIHGVLGVVGSGSSSNTSSPSGPSSPSESGRQPKG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G160500
[exp]
0 1
AT5G07010 ATST2A ARABIDOPSIS THALIANA SULFOTRAN... Potri.003G193500
[exp]
1.00 0.9611
AT3G48270 CYP71A26 "cytochrome P450, family 71, s... Potri.016G137600
[exp]
1.41 0.9547 CYP71AN3
AT2G14960 GH3.1 Auxin-responsive GH3 family pr... Potri.001G298300
[exp]
3.87 0.9393 3
AT3G52450 PUB22 plant U-box 22 (.1) Potri.006G202600
[exp]
7.21 0.9337
AT5G47710 Calcium-dependent lipid-bindin... Potri.016G005300
[exp]
7.74 0.9285
AT2G44260 Plant protein of unknown funct... Potri.018G087400
[exp]
8.06 0.9286
AT3G50900 unknown protein Potri.007G022300
[exp]
9.79 0.9045
AT5G09360 LAC14 laccase 14 (.1) Potri.019G088600
[exp]
10.39 0.9080
AT5G67050 alpha/beta-Hydrolases superfam... Potri.007G044500
[exp]
12.64 0.8802
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Potri.019G016900
[exp]
14.96 0.9061

Potri.005G160500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.