Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 479 / 9e-167 MATE efflux family protein (.1) AT5G10420 465 / 7e-161 MATE efflux family protein (.1) AT5G44050 449 / 9e-155 MATE efflux family protein (.1) AT1G47530 370 / 1e-123 MATE efflux family protein (.1) AT1G33110 362 / 2e-120 MATE efflux family protein (.1.2) AT1G33100 361 / 3e-120 MATE efflux family protein (.1) AT1G33080 352 / 1e-116 MATE efflux family protein (.1.2) AT1G33090 350 / 1e-115 MATE efflux family protein (.1) AT3G26590 338 / 4e-111 MATE efflux family protein (.1) AT1G12950 337 / 3e-110 RSH2 root hair specific 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010200 [exp] 523 / 0 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 493 / 6e-172 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 381 / 5e-128 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102000 [exp] 359 / 4e-121 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.019G063500 [exp] 359 / 6e-119 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 354 / 2e-117 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 353 / 3e-117 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.013G069250 [exp] 349 / 9e-116 AT3G03620 491 / 6e-171 MATE efflux family protein (.1) Potri.015G139400 [exp] 346 / 1e-114 AT3G03620 548 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020951 [exp] 580 / 0 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 515 / 1e-180 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 514 / 3e-180 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 485 / 2e-168 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 477 / 4e-166 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 450 / 2e-151 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 383 / 1e-128 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 365 / 9e-122 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 353 / 8e-117 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 352 / 9e-117 AT1G47530 665 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.005G160700.1 pacid=42802558 polypeptide=Potri.005G160700.1.p locus=Potri.005G160700 ID=Potri.005G160700.1.v4.1 annot-version=v4.1 ATGGGAGTAGGTGAGGAAGAGAACCCTCTTCTGTTTTCAGGGCTAGAAGCACATACACAACGACATCAACAAGTACACCTATCGAGTGGTGTATCCAGCA GCACGATTAAGGAAATATGGCTGGAATCAAAGAAGTTATGGCAAATTGCAGGTCCTTCAATCTTCAGCCGCCTAGCCATGTTCTCCATGACTGTCATAAC CCAATCATTCGCTGGCCACCTCGGTGATCTCAATCTTGCCTCCATCTCTATTGCCACCACTCTCATCATCTCTATCAGTTTTGGTTTCCTGTTAGGCATG GCAAGTGCATTGGAAACATTATGTGGTCGAGCTTATGGGGCTAAACAGTACCACATGCTGGGCATATACATGCAACGTTCTTGGATTGTTTTGTTTTTAT GCTCAATTTTGTTACTACCCTTGTTTTTGTTTGCAACTCCAATATTGAAGTTGATAGGACAGCCTGCAGACATAGCAGAACAGACAGGTTTAGTGGCGAT ATGGTTAATTCCGTTTCACTTTAGTTTCCCATTTCAGTTCACGTTACAAAGGTTCTTGCAGAGCCAGTTAAAGACTGGAGTGATTGCTCTGGTGTCTGGA GGGGCTCTTTTGATACATGTGATTTTGAGTTGGGTTTTTGTTTACAAGTTGAGAGTTGGGATTGTTGGGACTGCACTGACTCTTGATTTCTCTTGGTGGG TGTCTGTTTTTGGGATGTTTATCTACTGTGTTTGTGGTGGGTGTCAACTTTCTTGGACTGGGTTCTCTACACAAGCTTTTACGGGGCTTTGGGAGTTTTT CAAACTCTCTTTGGCTTCTGGGATCATGCTATTGTTGGAGAACATCTATTATAGAGTGTTGATTACGGTATCTGGATTTGTGCACAACACTAAAGTTGCA GTTGATGCCCTTTCCATCTGTGTAACGATACTCAGCTGGGAATCCATGATTCCACTTGGATTTTTGGCTGCAACGGGGGTTCGCGTGGCAAATGAACTAG GTGCAGGCAATGCAAAAGGTGCCAAATTTGCTACCATCGTGTCATTATTGACCTCTCTAGTGGTTGGACTATTGTTTTGGTCAATTGTCATAGCCTTCCC TGAGAAGCTTGCGATGATTTTCACCTCTAGCTCCTTTGTTATTTTAATGGTTAATGAGTTAGCAGTCTTGCTGGCATTCACCATTCTGCTCAATTGCATA CAGCCAGTTCTTTCAGGTGTGGCAATTGGATCTGGTTGGCAAGCATTAGTAGCTTATATAAACATAGGTAGCTACTACATAGTCGGGGTGCCTCTTGGGT TCTTGTTGGGTTGGTTGCTCCACTTTGGTATTAAAGGTCTCTGGGCTGGAATGATTTGCGGAACTGTGGTTCAAACGTTGGTACTCTCTGTCGTCACCAT GAAATGTGAATGGGAGAAGGAGGCAGAGAAAGCTCAAATCCACATAACTAAGGAAGCAGCCTCAACCTAA
AA sequence Show only first row Show all	>Potri.005G160700.1 pacid=42802558 polypeptide=Potri.005G160700.1.p locus=Potri.005G160700 ID=Potri.005G160700.1.v4.1 annot-version=v4.1 MGVGEEENPLLFSGLEAHTQRHQQVHLSSGVSSSTIKEIWLESKKLWQIAGPSIFSRLAMFSMTVITQSFAGHLGDLNLASISIATTLIISISFGFLLGM ASALETLCGRAYGAKQYHMLGIYMQRSWIVLFLCSILLLPLFLFATPILKLIGQPADIAEQTGLVAIWLIPFHFSFPFQFTLQRFLQSQLKTGVIALVSG GALLIHVILSWVFVYKLRVGIVGTALTLDFSWWVSVFGMFIYCVCGGCQLSWTGFSTQAFTGLWEFFKLSLASGIMLLLENIYYRVLITVSGFVHNTKVA VDALSICVTILSWESMIPLGFLAATGVRVANELGAGNAKGAKFATIVSLLTSLVVGLLFWSIVIAFPEKLAMIFTSSSFVILMVNELAVLLAFTILLNCI QPVLSGVAIGSGWQALVAYINIGSYYIVGVPLGFLLGWLLHFGIKGLWAGMICGTVVQTLVLSVVTMKCEWEKEAEKAQIHITKEAAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65380			MATE efflux family protein (.1...		Potri.005G160700 [exp]	0	1
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.017G066300 [exp]	1.41	0.8950
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G225000 [exp]	2.82	0.8821
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Potri.002G124200 [exp]	3.00	0.8632
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.008G066800 [exp]	4.47	0.8783
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	4.58	0.8841
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.013G152100 [exp]	4.69	0.8613
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230700 [exp]	5.19	0.8490	DHFR-TS-3b
AT4G20960			Cytidine/deoxycytidylate deami...		Potri.002G158800 [exp]	6.00	0.8381
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	9.16	0.8597
					Potri.001G194901 [exp]	9.74	0.8575

Compare expression of checked genes

Potri.005G160700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.