Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40080 208 / 2e-64 ENTH/ANTH/VHS superfamily protein (.1) AT5G10410 97 / 1e-22 ENTH/ANTH/VHS superfamily protein (.1) AT5G65370 71 / 1e-13 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 70 / 7e-13 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 68 / 3e-12 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 65 / 3e-11 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 61 / 5e-10 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 47 / 1e-05 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124907 [exp] 63 / 2e-11 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 64 / 7e-11 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 63 / 9e-11 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 62 / 1e-10 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 61 / 8e-10 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.002G224500 [exp] 59 / 4e-09 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 57 / 8e-09 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 56 / 2e-08 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023837 [exp] 278 / 5e-92 AT4G40080 192 / 1e-58 ENTH/ANTH/VHS superfamily protein (.1) Lus10002642 [exp] 134 / 8e-38 AT4G40080 199 / 2e-63 ENTH/ANTH/VHS superfamily protein (.1) Lus10002643 [exp] 132 / 4e-37 AT4G40080 203 / 8e-65 ENTH/ANTH/VHS superfamily protein (.1) Lus10002641 [exp] 104 / 5e-27 AT4G40080 164 / 4e-50 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 64 / 5e-11 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10012686 [exp] 61 / 6e-10 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 61 / 8e-10 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 61 / 8e-10 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 58 / 5e-09 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 55 / 5e-08 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.005G160800.2 pacid=42802970 polypeptide=Potri.005G160800.2.p locus=Potri.005G160800 ID=Potri.005G160800.2.v4.1 annot-version=v4.1 ATGGGCCACCGCAAGAAACTAAGGACTGTGATCGACATCCTCAAATGCCTCACCTCCAATATCAAAGCCACCCTATCAACAAAACGCAACACCAAAATAC GCATAGCTGTCCTCCGTGCCACCACTGCACGCAACTCTTCTTCCCCACCATCAGATAACCGCATCGCTGCGGTCATCTCCTTCGGCCGTGGGTCACGCCT CACCGCATGTGCATTAATTGAAGCTCTCATGGACCGTCTACATGGCACAAAAAACCCTTCCGTTGCCCTAAAATGTCTCTTCACTATCCATAGTATCATT AAAAAGGGCCCCTTTATTCTTAAAGACCAGCTTTCTTTTTATCCGTCTTTTGGTGGCAGAAACTTCCTCAACATGTCAAAGTTTCGGCAAGATTCGGACC CTGAAAGGTGGGAATTGGCATCTTGGGTTAGATGGTATGCAACTGTTATAGAGCAAAATTTTATTGTTTCGAGATTTTTGGGTCATTACTTAAATTCTTC TTGTTCTAGTAATAATAGCAAGGATAAAGAAGACAAGGCTTCTGCCTTATTGAATAAAGATTTGTTAGGAGAGTTAGATGTTCTAGTTGATTTTGTTGAA GTAATATGTGAGGCTCCTGATTCTCTGCATCTTCAAAGGACTAACTTGGTTTATGCAGTGATTAGATATGCTGGTGAGGATTATAGAATAGTCCAACGTG AGATTTTAATCCGAGTTGTAGAACTCAAGGATAGAATGGCAAGTTTGAGTTGCAATGAGTTGACTCAGTTACTTGGTTCTTTGAAGAGGTTTGAGGATTG CAAAGAGAGGCTGCGTCTGTTGTTTGTTAACAGGGCAAGAAATGATGCTCTATGGGAGTTGATACGTGGGGCAAAACTTAAGATCATGGAAATGGGTAAA TTAAAAAGTTTGGTGAAAATGGAAAGGACAGACGGTTCCGGCGAGTTAACTCGGTTCAGAGAACGATTTGGCGAATTGAGACAGCTGGTCCGGTTGAATT CTGGTGGTGGATGGTTGGGTGTGGATAGGGTTCCAGCTTTGACTATGTCGACAATGTTATGA
AA sequence Show only first row Show all	>Potri.005G160800.2 pacid=42802970 polypeptide=Potri.005G160800.2.p locus=Potri.005G160800 ID=Potri.005G160800.2.v4.1 annot-version=v4.1 MGHRKKLRTVIDILKCLTSNIKATLSTKRNTKIRIAVLRATTARNSSSPPSDNRIAAVISFGRGSRLTACALIEALMDRLHGTKNPSVALKCLFTIHSII KKGPFILKDQLSFYPSFGGRNFLNMSKFRQDSDPERWELASWVRWYATVIEQNFIVSRFLGHYLNSSCSSNNSKDKEDKASALLNKDLLGELDVLVDFVE VICEAPDSLHLQRTNLVYAVIRYAGEDYRIVQREILIRVVELKDRMASLSCNELTQLLGSLKRFEDCKERLRLLFVNRARNDALWELIRGAKLKIMEMGK LKSLVKMERTDGSGELTRFRERFGELRQLVRLNSGGGWLGVDRVPALTMSTML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Potri.005G160800 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	2.00	0.9318
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	5.38	0.8610
AT3G12630		SAP5	stress associated protein 5, A...		Potri.001G269400 [exp]	6.00	0.8754
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.005G057800 [exp]	8.06	0.8947
AT2G40095			Alpha/beta hydrolase related p...		Potri.008G067700 [exp]	8.48	0.8889
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	8.94	0.8979	ERF6
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	9.16	0.9064
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032600 [exp]	10.09	0.8934
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	10.81	0.8750
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	10.90	0.8930

Compare expression of checked genes

Potri.005G160800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.