Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40060 187 / 5e-58 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 176 / 7e-54 HD ATHB6 homeobox protein 6 (.1) AT5G65310 176 / 2e-53 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT1G69780 131 / 2e-36 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G15150 129 / 1e-35 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 125 / 2e-34 HD ATHB20 homeobox protein 20 (.1) AT3G01470 122 / 3e-33 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G26960 116 / 3e-31 HD ATHB23 homeobox protein 23 (.1) AT1G27045 107 / 3e-28 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT2G46680 100 / 5e-25 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100600 [exp] 458 / 2e-165 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G071900 [exp] 225 / 1e-72 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 218 / 9e-70 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.015G065400 [exp] 130 / 8e-36 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 127 / 7e-35 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.017G081700 [exp] 126 / 2e-34 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.008G148200 [exp] 123 / 1e-33 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.010G093400 [exp] 121 / 1e-32 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G194400 [exp] 116 / 6e-31 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023159 [exp] 155 / 8e-46 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10012845 [exp] 134 / 7e-38 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 134 / 7e-38 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10037200 [exp] 132 / 6e-37 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10036730 [exp] 132 / 9e-37 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10042180 [exp] 129 / 2e-35 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 128 / 4e-35 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 125 / 5e-34 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10004270 [exp] 123 / 5e-33 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 119 / 5e-32 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.005G161500.1 pacid=42802361 polypeptide=Potri.005G161500.1.p locus=Potri.005G161500 ID=Potri.005G161500.1.v4.1 annot-version=v4.1 ATGAAGCGCTTCAATTCCTCAGATTCCTTGGCTGCTTTCATCTCTATTACTTCTTCGAAAGAAGATAGGACTCAAAACACCAACCAAGGTTACAGTAGAG ATTTTCAGGCAATGCTGGACAGTCTCGAAGAAGAAGACTACATTGAGGAAGCCAACCTTGGAAGTGAGAAGAAACGAAGGCTAACCTTGCATCAAGTTAA GGCCTTGGAGAAGAATTTTGAGGTCGATAACAAGCTTGTGCCAGAGAGAAAGCTGAAATTAGCTGAAGAATTATGCCTGCAACCACGACAAGTGGCTATT TGGTTCCAAAACCGTCGAGCCCGTTGGAAGACTAAGCAATTGGAAAGAGATTATGGCACCCTTAAGGCAAACTATGAAGCTCTAAATCTTGATTACAGTA ATCTTGAACAGAAGAATGAAGCCTTAGCACAAAAGGTAAAAGAATTGAAAGCAAAGTTGAGAGAAGAAATAGTTGATAGCAGTCACTCTGTAAAAGAAGA GTACCATGTTTCAGAGTCAGACAACAATGCCTCAGTGCACAGTCAGAACCATGATTTCAGTGAACACAAGAATTCGAGTGCAGTCACCAAAGACCACAGC AATGTTTCCTCTTCAAATGAATTGATGAATTGCTTTAATTTAACTGATTCGAGAGCTATTTTGGGGAATAGGTATCAAGTATATCAACCCCATCTTATGA AACTAGAAGAGCAGAGTTTGTTTAGCGCTGAGGAATCATGCAATTTCTTTTCAGTTGATCAAGCTCCCACACTTCATTGCTATTTTCCTGAACAATAA
AA sequence Show only first row Show all	>Potri.005G161500.1 pacid=42802361 polypeptide=Potri.005G161500.1.p locus=Potri.005G161500 ID=Potri.005G161500.1.v4.1 annot-version=v4.1 MKRFNSSDSLAAFISITSSKEDRTQNTNQGYSRDFQAMLDSLEEEDYIEEANLGSEKKRRLTLHQVKALEKNFEVDNKLVPERKLKLAEELCLQPRQVAI WFQNRRARWKTKQLERDYGTLKANYEALNLDYSNLEQKNEALAQKVKELKAKLREEIVDSSHSVKEEYHVSESDNNASVHSQNHDFSEHKNSSAVTKDHS NVSSSNELMNCFNLTDSRAILGNRYQVYQPHLMKLEEQSLFSAEESCNFFSVDQAPTLHCYFPEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.005G161500 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.010G093400 [exp]	5.19	0.8371	ATHB13.3
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Potri.006G098700 [exp]	8.06	0.8427
AT1G72125			Major facilitator superfamily ...		Potri.017G145550 [exp]	10.95	0.8207
AT3G50160			Plant protein of unknown funct...		Potri.001G333000 [exp]	12.00	0.8151
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G183000 [exp]	12.56	0.8406
AT1G80530			Major facilitator superfamily ...		Potri.001G204700 [exp]	15.74	0.7708
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.008G155700 [exp]	16.73	0.7902
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Potri.006G095500 [exp]	16.73	0.7867	UCP2.2
AT5G60450	ARF	ARF4	auxin response factor 4 (.1)		Potri.009G011800 [exp]	25.69	0.7736
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	27.27	0.8268

Compare expression of checked genes

Potri.005G161500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.