Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22460 680 / 0 O-fucosyltransferase family protein (.1) AT5G64600 565 / 0 O-fucosyltransferase family protein (.1) AT3G54100 429 / 6e-144 O-fucosyltransferase family protein (.1) AT2G37980 427 / 1e-143 O-fucosyltransferase family protein (.1) AT5G01100 405 / 1e-134 O-fucosyltransferase family protein (.1) AT1G14020 393 / 7e-132 O-fucosyltransferase family protein (.1) AT3G02250 392 / 3e-131 O-fucosyltransferase family protein (.1) AT5G35570 396 / 4e-131 O-fucosyltransferase family protein (.1) AT5G15740 388 / 6e-130 RRT1 O-fucosyltransferase family protein (.1) AT2G03280 380 / 4e-127 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100400 [exp] 946 / 0 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 561 / 0 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 434 / 5e-145 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 424 / 3e-142 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 410 / 1e-138 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 405 / 6e-137 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 397 / 2e-133 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 391 / 4e-131 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 387 / 8e-128 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008719 [exp] 756 / 0 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 688 / 0 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 488 / 3e-169 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 422 / 4e-141 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 413 / 1e-139 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 417 / 2e-139 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 417 / 3e-139 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 416 / 6e-139 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 409 / 4e-138 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 401 / 5e-135 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G161800.1 pacid=42803904 polypeptide=Potri.005G161800.1.p locus=Potri.005G161800 ID=Potri.005G161800.1.v4.1 annot-version=v4.1 ATGATGCAGAAGCGAAGATGGAAGACCGTGGGTTTGATGAGGAAGATGCTATCATGCGCCATATGCACGATAGCGATGATGGCCCTCCTCTCCGTACACT TACATGTTTTCCCTCCTTACTCTAAACTCCCTGATCCTTACAGGCTTCCTCATCCCCAAATTGAAATCAGAGACAAGATATTGGGCAAAGAGCAAGAACA GAGCTGGACCAGTGAGATCACTCCTCCCAATGTATACAAAGGCCCTCTCTCATCCCACCAGTGTTCTGATCGGAACCCCAACTGTACCAAACTATGGAAG CCTCCACCAAATCGCAATTATTTGCCTTGTACTCAACCTAGTCCTAACTATACTTCTCCTTCAGAGTCGAGAGGTTACCTTCTAGCTCATACAAATGGAG GGCTCAACCAGATGCGAGCTGGGATATGTGATATGGTAGCTATTGCACATATCATAAATGCCACTCTTGTTGTTCCAAAACTAGATAAAAAGTCATATTG GCAAGATTCCAGCAACTTTTCAGATGTCTTTGATGAAGATCATTTTATCAATGCTCTAGCTAATGATGTGAAAGTCATTAAAAAGCTTCCCAAGGAAATA GGTAGTTCTATGAAAGCAGTTAAATATTTTAAAAGCTGGTCTGGTATGGACTACTACCAGGAAGAGATAGCAAGCATGTGGGCTGATTATAAGGTTATTC GGGCTGCCAAGACTGACTCTCGCCTAGCAAATAACAATCTCCCTCCTGATATTCAGAAGCTGCGTTGCCGTGCCTGTTATGAAGCCCTCCGTTTTGCACC TCAAATTGAAGCAATGGGAAAGTTGTTGGTGGACCGCATGAGGTCATATGGTCCTTATATTTCCCTGCACTTACGATATGAGAAGGACATGCTTGCCTTC AGTGGATGTACACATGATTTGTCTCCTGCTGAAGCAAATGAACTAAAAATGATACGAGACGCAAATGATAACTGGAAAGTGAAGGATATTGATCCCAGGG AGCAGAGATCCAAGGGTTTTTGCCCCTTAACTCCAAAGGAGGCTGCAATATTTCTATCTGCTCTTGGTTACCCATCAAATACCCCTATCTACATTGCCGC AGGAGAGATATATGGAGGTGATTCACATATGGGTGATCTACAATCCCGATATCCTATGTTGATGCGCAAGGAAACGTTGGCATCTTTTGAGGAGCTTGAA CCATTTACCAATCACTTGTCTCAGCTGGCTGCGCTTGACTATATTGTATCTGTTGAAAGTGATGTATTCATGCCGACATACTCTGGAAACATGGCAAGGG CAGTCGAAGGTCATCGTCGCTTTCTTGGACATAGAAGAACAATTTCCCCGGACAGGAAAGCACTTGTTCGTCTGTTTGATAAAATTGAGCAGGGAAAACT GAAAGAAGGCAAATATTTATCAGACCATGTCATTGAAAGCCACAGAAAACGGCAAGGCTCCCCAAGGAAGAGGAAAGGCCCCATTTCTGGAACAAAGGGC ACAGATAGGTTTCGTTCAGAAGAAGCTTTTTATGTAAATCCTTTACCAGATTGTTTATGTCAGGGGCAATCCCAGAATCTGAACACCTCTATCATAACAA GTTAG
AA sequence Show only first row Show all	>Potri.005G161800.1 pacid=42803904 polypeptide=Potri.005G161800.1.p locus=Potri.005G161800 ID=Potri.005G161800.1.v4.1 annot-version=v4.1 MMQKRRWKTVGLMRKMLSCAICTIAMMALLSVHLHVFPPYSKLPDPYRLPHPQIEIRDKILGKEQEQSWTSEITPPNVYKGPLSSHQCSDRNPNCTKLWK PPPNRNYLPCTQPSPNYTSPSESRGYLLAHTNGGLNQMRAGICDMVAIAHIINATLVVPKLDKKSYWQDSSNFSDVFDEDHFINALANDVKVIKKLPKEI GSSMKAVKYFKSWSGMDYYQEEIASMWADYKVIRAAKTDSRLANNNLPPDIQKLRCRACYEALRFAPQIEAMGKLLVDRMRSYGPYISLHLRYEKDMLAF SGCTHDLSPAEANELKMIRDANDNWKVKDIDPREQRSKGFCPLTPKEAAIFLSALGYPSNTPIYIAAGEIYGGDSHMGDLQSRYPMLMRKETLASFEELE PFTNHLSQLAALDYIVSVESDVFMPTYSGNMARAVEGHRRFLGHRRTISPDRKALVRLFDKIEQGKLKEGKYLSDHVIESHRKRQGSPRKRKGPISGTKG TDRFRSEEAFYVNPLPDCLCQGQSQNLNTSIITS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22460			O-fucosyltransferase family pr...		Potri.005G161800 [exp]	0	1
AT4G39130			Dehydrin family protein (.1)		Potri.009G120100 [exp]	2.23	0.7665
AT2G40700			P-loop containing nucleoside t...		Potri.019G059100 [exp]	6.63	0.7200
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.004G099300 [exp]	7.14	0.7269
AT5G27860			unknown protein		Potri.005G023000 [exp]	11.40	0.7147
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.019G081100 [exp]	12.72	0.6662
AT4G27590			Heavy metal transport/detoxifi...		Potri.015G003800 [exp]	29.59	0.7107
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Potri.010G146400 [exp]	32.24	0.6697
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.006G270700 [exp]	33.91	0.6350
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	39.30	0.6703
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.009G163800 [exp]	40.19	0.6023

Compare expression of checked genes

Potri.005G161800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.