Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09010 451 / 7e-160 TL29, APX4 thylakoid lumen 29, ascorbate peroxidase 4 (.1) AT4G32320 77 / 2e-15 APX6 ascorbate peroxidase 6 (.1) AT4G35970 71 / 1e-13 APX5 ascorbate peroxidase 5 (.1) AT3G09640 70 / 2e-13 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G35000 67 / 3e-12 APX3 ascorbate peroxidase 3 (.1) AT1G07890 59 / 6e-10 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT4G08390 56 / 1e-08 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 54 / 1e-07 TAPX thylakoidal ascorbate peroxidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254500 [exp] 75 / 8e-15 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1) Potri.009G015400 [exp] 70 / 1e-13 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.004G174500 [exp] 70 / 2e-13 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.016G084800 [exp] 69 / 3e-13 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G132200 [exp] 67 / 1e-12 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.005G112200 [exp] 67 / 2e-12 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 64 / 2e-11 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.005G179200 [exp] 54 / 9e-08 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 49 / 2e-06 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020942 [exp] 485 / 6e-173 AT4G09010 473 / 6e-168 thylakoid lumen 29, ascorbate peroxidase 4 (.1) Lus10008718 [exp] 475 / 1e-168 AT4G09010 468 / 4e-166 thylakoid lumen 29, ascorbate peroxidase 4 (.1) Lus10019781 [exp] 79 / 2e-16 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10014128 [exp] 77 / 9e-16 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019906 [exp] 69 / 4e-13 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10013537 [exp] 67 / 2e-12 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 67 / 3e-12 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10000180 [exp] 67 / 3e-12 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10002916 [exp] 63 / 7e-11 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1) Lus10028432 [exp] 62 / 2e-10 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.005G161900.5 pacid=42804801 polypeptide=Potri.005G161900.5.p locus=Potri.005G161900 ID=Potri.005G161900.5.v4.1 annot-version=v4.1 ATGGGTGCTTCTTTCCTATCAACCCTCCCCTCTTTGGTTAGTGTCCCTTCTTTAACCATCTCTACTACTCCTACCATTAGATGTCCTTCTCATGCTGTCG CAATTCGTTGTCATAAAATGGACACTGATGTCCCTGGTGAGAATGTTCTACGGCGAAGAGAAGTTTTGAAATGCTTTGGTGCTGCTGTTGGCATGGAATT GCTAGCAAGCTCAGGATCATTTGTTGAAATGGCTAGTGCTGCTGATTTGATCCAACGCAGGCAGCGTTCTGAGTTTCAGTCCAGCATAAGGCAGACCCTT TTCGCAGCTATAAAGGGCAAACCTGAACTTGTACCATACATTCTAACTCTGGCTCTGAATGATGCCATTACTTATGATAAGGCTACAAAATCTGGGGGCC CAAATGGATCCATACGATTCAGTTCAGAGATAAGCAGACCTGAAAATAAGGGACTTTCTGCCGCGTTGAATTTAATAGAGGAAGCGAAGGAGGAGATTGA TTCATATTCCAAGGGTGGACCCATCTCTTTTGCAGATCTTATCCCGTATGCAGGACAAAGTGCTGTTAAGGCTACATTTCTGGCTTCTGCCATCCGCAAG TGTGGCGGTAATGAACAGAAAGGAAGCTTATTGTACTCCGCATATGGATCCAGTGGACAGTGGGGATTGTTTGATAGACAATTCGGAAGGACAGATTCCC AAGAGCCAGATCCAGAAGGGAGGGTTCCCCAGTGGGAGAAAGCCACAGTCCAAGAAATGAAAGACAAGTTCTCATCTATTGGCTTTGGTCCCCGCCAGCT AGCTGTTATGTCTGCGTTCTTGGGTCCTGATCAAGCAGCAACAGAGGCCTTACTGGCAACTGATCCAGATGTTACACCATGGGTTCAGAAGTACCAACGT AGCCGAGAAACAGTGTCTCAGACAGATTATGAGGTCGATCTGATAACTACTCTCACTAAATTAAGTTCCATGGGCCAACAAATCAATTATGAAGCATATA CATATCCTGTCCGAAAGATTGAGTTGAGCAAACTCAAGTTATAG
AA sequence Show only first row Show all	>Potri.005G161900.5 pacid=42804801 polypeptide=Potri.005G161900.5.p locus=Potri.005G161900 ID=Potri.005G161900.5.v4.1 annot-version=v4.1 MGASFLSTLPSLVSVPSLTISTTPTIRCPSHAVAIRCHKMDTDVPGENVLRRREVLKCFGAAVGMELLASSGSFVEMASAADLIQRRQRSEFQSSIRQTL FAAIKGKPELVPYILTLALNDAITYDKATKSGGPNGSIRFSSEISRPENKGLSAALNLIEEAKEEIDSYSKGGPISFADLIPYAGQSAVKATFLASAIRK CGGNEQKGSLLYSAYGSSGQWGLFDRQFGRTDSQEPDPEGRVPQWEKATVQEMKDKFSSIGFGPRQLAVMSAFLGPDQAATEALLATDPDVTPWVQKYQR SRETVSQTDYEVDLITTLTKLSSMGQQINYEAYTYPVRKIELSKLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Potri.005G161900 [exp]	0	1
AT4G01150			unknown protein		Potri.014G093900 [exp]	2.00	0.9814	CAM2.1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.015G104500 [exp]	2.44	0.9753
AT1G76450			Photosystem II reaction center...		Potri.005G256600 [exp]	3.60	0.9596
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	6.32	0.9692
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Potri.018G053600 [exp]	7.34	0.9657
AT1G32470			Single hybrid motif superfamil...		Potri.001G144800 [exp]	7.74	0.9697	gdcH4,GDCH.2
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Potri.002G253800 [exp]	9.32	0.9698	PSAE1.1
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.001G244800 [exp]	9.48	0.9617
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	9.53	0.9648
AT1G56190			Phosphoglycerate kinase family...		Potri.010G171500 [exp]	13.96	0.9579	Pt-PGK1.1

Compare expression of checked genes

Potri.005G161900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.