Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78310 142 / 7e-40 VQ motif-containing protein (.1) AT2G35230 60 / 5e-10 IKU1 HAIKU1, VQ motif-containing protein (.1.2) AT5G46780 44 / 8e-05 VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099900 [exp] 283 / 1e-94 AT1G78310 141 / 2e-39 VQ motif-containing protein (.1) Potri.003G091800 [exp] 64 / 2e-11 AT1G32610 71 / 1e-13 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.001G142400 [exp] 63 / 5e-11 AT2G35230 96 / 5e-22 HAIKU1, VQ motif-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010346 [exp] 145 / 1e-41 AT1G78310 158 / 8e-47 VQ motif-containing protein (.1) Lus10036479 [exp] 137 / 1e-38 AT1G78310 153 / 6e-45 VQ motif-containing protein (.1) Lus10036480 [exp] 75 / 7e-15 AT1G78310 95 / 8e-22 VQ motif-containing protein (.1) Lus10010348 [exp] 59 / 3e-10 AT1G78310 55 / 6e-09 VQ motif-containing protein (.1) Lus10010347 [exp] 53 / 1e-08 AT1G78310 78 / 4e-18 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.005G162300.1 pacid=42803569 polypeptide=Potri.005G162300.1.p locus=Potri.005G162300 ID=Potri.005G162300.1.v4.1 annot-version=v4.1 ATGGATAGAGGCTGTCAATCCTCCGGTGATTCTACAATCACCAGTGTTAATAGCACTAGCACCACCATCAACAACAGAGATCACTATCTCAAACACCTCA ACAAACTCTCTCACAAGATCTCCAAACCCCCCATCATCACCGCCACCTCCACCATAAAAAAAAACCCTTTTGATCAGCCAAATCAGCTGCAACCACATCC ATCATCACAACAGCCGCCAAATCAAGATCTGCAGGGGCAGCAGCAGCCTCCTGTTTACAATATAAACAAGAGTGATTTCCGTGACCTGGTACAAAAACTA ACTGGATCTCCAGCTCACGAGAGATTCTCTACCCCTCCACCTATACACCCACCCAAACCTCAAAGCATTCGCTTACAACGCATTCGTCCTCCACCCTTGG TTCAAGTTAGCAACCGCCCTCCTCCTCTGCTAAACAGCGTCATCCCCCCTCCTCAACAAAAACTACTCACCACCGCCTCAAACCCCTCCGCCACCAACAC CTTCATCCAACGGTCAACGACACCTCTCTCACCATTGCCGCCATTCCCGGCGGTTCACGCGGCGGCTGAGTCGCCAGTTTCTGCTTACATGCGGTATCTC CAGAACACGATCTCGGCTGTTGATTCTAACAAGCAGTTCTCGGGATTCTCGCCGCTGGCACCGCTTGTTTCACCTAGATGGAACAATCAAACAGCTTCAA AGCAGCAATTTCCCTTCCCGCCCCAGCAACAAGGAGTAGATCCCTCGCAGTCAGCGGGAATGATAGCGCCACAGGCACATGAACAGCCGCAGTTTCAATT GCCAACTTCACCTTTGCCTTTTGGATGCTTGAATTCACCGCGGTCTCCATATCCTTTGCTTTCCCCGTCTTCATTTCCTCTCTCACCCACAGTGCCTGTA CATAGCCCTAGATGGAGAAGTCTTTAA
AA sequence Show only first row Show all	>Potri.005G162300.1 pacid=42803569 polypeptide=Potri.005G162300.1.p locus=Potri.005G162300 ID=Potri.005G162300.1.v4.1 annot-version=v4.1 MDRGCQSSGDSTITSVNSTSTTINNRDHYLKHLNKLSHKISKPPIITATSTIKKNPFDQPNQLQPHPSSQQPPNQDLQGQQQPPVYNINKSDFRDLVQKL TGSPAHERFSTPPPIHPPKPQSIRLQRIRPPPLVQVSNRPPPLLNSVIPPPQQKLLTTASNPSATNTFIQRSTTPLSPLPPFPAVHAAAESPVSAYMRYL QNTISAVDSNKQFSGFSPLAPLVSPRWNNQTASKQQFPFPPQQQGVDPSQSAGMIAPQAHEQPQFQLPTSPLPFGCLNSPRSPYPLLSPSSFPLSPTVPV HSPRWRSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	0	1
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Potri.001G129900 [exp]	2.00	0.9083
AT4G11655			Uncharacterised protein family...		Potri.001G102600 [exp]	3.16	0.9156
					Potri.017G035600 [exp]	9.16	0.8994
AT5G47070			Protein kinase superfamily pro...		Potri.001G149100 [exp]	10.81	0.8530
AT3G19580	C2H2ZnF	AZF2	zinc-finger protein 2 (.1.2)		Potri.009G089400 [exp]	15.19	0.8982
AT1G32690			unknown protein		Potri.003G092700 [exp]	15.74	0.9110
AT1G02070			unknown protein		Potri.005G158400 [exp]	16.61	0.9097
AT3G06270			Protein phosphatase 2C family ...		Potri.008G198700 [exp]	16.73	0.8870
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Potri.001G249400 [exp]	18.73	0.8738
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Potri.019G031400 [exp]	19.59	0.8706

Compare expression of checked genes

Potri.005G162300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.