Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78240 1028 / 0 OSU1, TSD2, QUA2 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G13860 654 / 0 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) AT2G03480 641 / 0 QUL2 QUASIMODO2 LIKE 2 (.1.2) AT3G23300 363 / 9e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G14430 361 / 8e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G04430 355 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G14360 354 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 350 / 6e-111 Putative methyltransferase family protein (.1) AT1G77260 335 / 1e-105 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 331 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098000 [exp] 1297 / 0 AT1G78240 1040 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G159400 [exp] 718 / 0 AT2G03480 885 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.008G094800 [exp] 712 / 0 AT2G03480 873 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.001G342300 [exp] 361 / 5e-116 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036800 [exp] 355 / 1e-113 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 353 / 6e-113 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 343 / 2e-108 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 332 / 6e-104 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 328 / 1e-102 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036485 [exp] 973 / 0 AT1G78240 928 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010353 [exp] 905 / 0 AT1G78240 859 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10036883 [exp] 674 / 0 AT1G13860 887 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10037101 [exp] 671 / 0 AT1G13860 892 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10022291 [exp] 377 / 2e-122 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 375 / 2e-121 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10001013 [exp] 348 / 4e-110 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 347 / 1e-109 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011815 [exp] 344 / 2e-109 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10004702 [exp] 345 / 3e-109 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G163900.2 pacid=42804984 polypeptide=Potri.005G163900.2.p locus=Potri.005G163900 ID=Potri.005G163900.2.v4.1 annot-version=v4.1 ATGTCTAGGCCTCTGCATCGAGGTGCAACAGGGATACGGATCTCTGGGAACAGCAATGATTTATGGGACTCCCAAATGAAAGATAAAACAGAAAAGGAAG ATATGGATAGGAATCGTTCTTCTGATCAAAGTTATTTAGCTCTGAAGTTTCCTTTCCGTGTACTTTTTCCTGATAATAATTCTCCTTCCAAATATGTCAA CGGTGAAAGTGGCTTTGCATCTGATCCATTCAGTGTCGGAAGTCCAAGAAGCCGACACAAATTAACATTGCTACTTTTGAAGTTGAGCTTAGCTGTGATT GTAGTTCTTGCTCTTACCGGATCTTTTTGGTGGACGATCTCAATATCGACATTGTCAAGGGGTCAAATATTACACACTTATAGGCGACTCCAGGAGCAAC TTGTTTCTGACATGTGGGATATTGGGGAGCTATCTCTTGGTTCCTCGAGGTTGCAAGAATTGGAGTTCTGTTCTCAAGAGTCTGAAATTTATGTTCCTTG CTTCAATGTTTCCGAGAATCTTGCTTTGGGATATTCTGATGGTAGCGAGAATGATCGTCATTGTGGGCAGAGTTCGAGGCAAAGTTGCATGGTGCTTCCT CCTGTAAATTATAGGATCCCTCTTCATTGGCCTACGGGAAGAGACATCATCTGGGTTGCAAATGTAAAACTTACTGCACAAGAGGTTCTTTCATCTGGTA GTTTGACAAAGAGGATGATGATGTTGGATGAAGAGCAGATTTCTTTTCGTTCAGCCTCTCCCATGTTTGATGGTGTTGAAGATTACTCACATCAAATTGC TGAAATGATTGGACTGAGAAATGAATCCAACTTTGTACAAGCTGGGGTGAGAACCATTTTGGATATAGGATGTGGTTATGGTAGCTTTGGAGCACATCTC TTTTCGAAGCAGCTCTTAACTATGTGCATTGCAAACTATGAGCCTTCAGGCAGTCAAGTTCAACTTACTCTTGAAAGAGGTCTTCCTGCGATGATTGGTT CTTTTACTTCGAATCAATTGCCATACCCTTCTCTTTCCTTTGATATGTTGCATTGTGCACGATGTGGTGTTGATTGGGACCACAAAGATGGTATTTTTTT AATCGAAGCTGACAGAGTTTTGAAGCCCGGTGGGTATTTTGTCTGGACTTCACCACTTACCAATGCTCGTAACAAAGAGAACCAGAAAAGGTGGAACTTT GTACGAGATTTTGCTGAAAATCTCTGCTGGGAGATGCTGTCACAACAAGATGAAACTGTTTTATGGAAAAAGACCAGTAAAAAAAGCTGCTATAGTTCAC GGAAGCCCGGTGCAGGCCCTTCCACCTGCAGTAAAGCTCATGATGTTGAATCTCCTTATTATAGACCACTCCAAGGGTGCATAGCTGGAACACAGAGTCG CCGATGGATTCCTATCCAAGAGAAGACATCCTGGCCTTCTAGGTCTCACTTGAACAAGAGTGAGCTTACAGTATACGGCCTGCATCCAGCAGACTTTAGG GAAGATGCAGAGAACTGGAAAACAACACTCCCTAATTATTGGTCTGTTTTGTCACCAATAATATTCTCTGATCATCCTAAGAGACCTGGTGAAGAGGATC CTTCTCCACCTTATAACATGGTCCGGAATGTACTAGACATGAACGCTCATTTTGGCGGTTTCAATTCAGCACTACTGGAAGCCGGGAAGTCTGTATGGGT AATGAATGTGGTCCCAACAGGAGGACCAAACTACCTTCCCTTGATAGTGGACAGAGGCTTGATCGGTGTACTGCATGATTGGTGCGAGCCATTCCCGACT TACCCTAGAAGTTATGATTTAGTGCATGCGGAAGGGCTCTTATCCCTTCAAACCCGTCAGCAGCGCTGGTGCACCATGCTGGATCTATTCACCGAGATAG ATCGGTTACTTCGTCCAGAGGGTTGGGTGATAATGCGTGACACAGCTCCACTTGTTGAATCAGCAAGAAGGCTGACTACACGGCTGAAGTGGGATGCACG AGTTATAGAAATCGAAAGTAACAGTGACGATAGACTCCTTATCTGCCAGAAACCTTTCTTTAAGAGACAAGGAGTCTCGTCTTGA
AA sequence Show only first row Show all	>Potri.005G163900.2 pacid=42804984 polypeptide=Potri.005G163900.2.p locus=Potri.005G163900 ID=Potri.005G163900.2.v4.1 annot-version=v4.1 MSRPLHRGATGIRISGNSNDLWDSQMKDKTEKEDMDRNRSSDQSYLALKFPFRVLFPDNNSPSKYVNGESGFASDPFSVGSPRSRHKLTLLLLKLSLAVI VVLALTGSFWWTISISTLSRGQILHTYRRLQEQLVSDMWDIGELSLGSSRLQELEFCSQESEIYVPCFNVSENLALGYSDGSENDRHCGQSSRQSCMVLP PVNYRIPLHWPTGRDIIWVANVKLTAQEVLSSGSLTKRMMMLDEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFVQAGVRTILDIGCGYGSFGAHL FSKQLLTMCIANYEPSGSQVQLTLERGLPAMIGSFTSNQLPYPSLSFDMLHCARCGVDWDHKDGIFLIEADRVLKPGGYFVWTSPLTNARNKENQKRWNF VRDFAENLCWEMLSQQDETVLWKKTSKKSCYSSRKPGAGPSTCSKAHDVESPYYRPLQGCIAGTQSRRWIPIQEKTSWPSRSHLNKSELTVYGLHPADFR EDAENWKTTLPNYWSVLSPIIFSDHPKRPGEEDPSPPYNMVRNVLDMNAHFGGFNSALLEAGKSVWVMNVVPTGGPNYLPLIVDRGLIGVLHDWCEPFPT YPRSYDLVHAEGLLSLQTRQQRWCTMLDLFTEIDRLLRPEGWVIMRDTAPLVESARRLTTRLKWDARVIEIESNSDDRLLICQKPFFKRQGVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.005G163900 [exp]	0	1
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Potri.001G160600 [exp]	4.69	0.8621	SETH1.2
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Potri.001G116900 [exp]	7.48	0.8594	Pt-KEU.2
AT1G72960			Root hair defective 3 GTP-bind...		Potri.001G201000 [exp]	13.03	0.8583
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	14.21	0.8762	Pt-SAH7.2
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	16.91	0.8495
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	25.00	0.8719
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	26.83	0.8592
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	28.07	0.8726
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.009G073400 [exp]	29.39	0.8586	Pt-SIRANBP.2
AT4G21450			PapD-like superfamily protein ...		Potri.013G147800 [exp]	31.08	0.8680

Compare expression of checked genes

Potri.005G163900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.