Plant FIBer expression Database

Potri.005G164000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78230 464 / 3e-155 Outer arm dynein light chain 1 protein (.1)
AT4G03260 219 / 4e-62 Outer arm dynein light chain 1 protein (.1.2)
AT5G19680 49 / 7e-06 Leucine-rich repeat (LRR) family protein (.1)
AT2G34680 45 / 0.0003 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G097800
[exp]
1001 / 0 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1)
Potri.019G119300
[exp]
228 / 3e-65 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2)
Potri.019G119500
[exp]
214 / 5e-60 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2)
Potri.013G150300
[exp]
186 / 3e-50 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2)
Potri.004G199200
[exp]
53 / 5e-07 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Potri.018G086200
[exp]
47 / 3e-05 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1)
Potri.011G090200
[exp]
46 / 0.0001 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Potri.006G163900
[exp]
45 / 0.0001 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020932
[exp]
474 / 2e-159 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1)
Lus10033444
[exp]
469 / 4e-158 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1)
Lus10018514
[exp]
222 / 4e-63 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2)
Lus10039729
[exp]
198 / 1e-54 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2)
Lus10012715
[exp]
47 / 2e-05 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1)
Lus10010891
[exp]
45 / 6e-05 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0022 LRR PF00560 LRR_1 Leucine Rich Repeat
Representative CDS sequence
>Potri.005G164000.3 pacid=42804337 polypeptide=Potri.005G164000.3.p locus=Potri.005G164000 ID=Potri.005G164000.3.v4.1 annot-version=v4.1
ATGATGAAATTTAACTGCTTCTCTGGTCCGATTGGGAGGAAGAAGAAAGAGAAGGTTGATAAGCAATCATCAAGAACAGCTGACTTCAATACTGCGCTTA
AAACCCTGAATATCGGGCTTCAGCACCCAGTGGAACCTTTTGAAAGCGATGGGTTGAAAAGCACATCTTTTGGTGTGTCATTTCCTTTAGATGTTGAGAA
GGACTCAATCAATGTACAGGTGATGAGCCATGAGAGTCCTGTTGTGAATGAAGCAGCATATGAAGGAGAAGATGAGCTTGAAGAGGATGTTTCAATGAAG
AGGGACTTATCTGACCTTGATCTCCAATCCCATGTGGCCAATTCTGGTGAAGAAGTGTCTTTTCCTATAAGTGCAAGGCTGGATTCCTCTGATTCACTTG
ATAGAATGGGTAATGAACGATATGCAAAGAAAGATGAGAAAAAAGTTGATGAAAAAGGTATTGATGTCATACAAAGTGGACATGTTAGTGATCCTGGTAT
TGGGAAGGCTGAGTTTTGGGGTTCGCCTAAGCTTAAACGGTCCTGTTCTAATCTGGAAACAAGCAAATTCCTAAGAAAAATTGCCAATCAGCTGCCTCTA
GCATCTCAGTATTCTGAAGAATTGCAGGGACTGGCTGAGAAATTGAGAGATCCTCGCAGCCCCACATCTATAATAAGCCACTGCAGTGCCGACAGAGTGA
TGTTAAAGAAGCATTCTTCTAGCCAAGTTCTACCCTCTAGGAGTAGAAGACTCTGGTGGAAATTGTTCCTCTGGAGCCACAGAAATCTTCACAAACCCTG
GTATGTAAAACCACAGCCACAGGCTGTAAGTAAGGTTTTGAATCAGCAAGGTGGCTACTCTTCAGATACACTTGAACTAGACAGAGCCCTGAGCAAGATG
CAATCACCTGGTTCATTCACCAGAGAGTCAATGAACAAGGGCCGTATCAATAATGAAGAGGACAGTCAGAGCTGGAATGGTTTTCATGCTGGGATTTCTG
GTCTATGGCCCCAGAACCAGTGGGTTGCTTTCTCAATAGAGTCATCTCCATTTTCAAGAGTGAATAAATGGGTCGAAGATCTTGAGACCCAACCCCCTCC
TCCAGATGCCCATGATGATAACAATGATGTTAAGAGTGACAATGACATTGTTTTCCTACCCTCTCCTGATACTGGTAGATCACCAGGAAGAACCACGGCA
TGCCCAGATTTTAATTTCTCAGAGGAGATTTTGCATGCCAATAGCGTGATCCAGTCACTTAATTCATCCTCAACTGTAGCCCACATTGCAGGCATTGGCT
TAAAAGCTATTCCCACCATATCACATTTCTCCAGTCTTCGATCTGTTAACTTGTCAAACAATGTCATAGTCCACATTACTCCTGGATCACTGCCAAAGGG
CCTTCACACACTCAACCTTTCGAAAAACAGGATCGGCACTATTGAAGGACTCAGAGATCTCATCCGATTGCGGGTACTCGATCTCAGTTACAATCGCATT
TTTCGGCTTGGACAAGGGTTGTCAAACTGTACAATAATAAAGGAACTCTATCTTGCTGGGAACAAGATTAGTGATGTTGAGGGGCTGCACAGGCTCCTGA
AGCTTACAGTCTTAGACCTGAGCTTTAACAAGATAACAACAACAAAAGCTCTGGGCCAGCTTGTTGCGAACTACAACTCACTGCAAGCTCTGAATCTTGT
GGGGAATCCAATTCAGAGCAACATCAGTGATGACCAGCTTCGCAAGGCAATTTGTGGTCTCCTCCCTAAGCTAGTGTACCTGAACAAGCAACCCATCAAA
CCACAGAGAGCGCGAGAAGTTCTCACAGATAGTGTTGCCAGAGCCGCCCTTGGAACCAGCAGCAGCAGGAGCTATCGGAAAAAAGCAGTGAAGGGAGTGA
CCTCCAGCAGTTCAATCTCCAGTATGCACAGGGGCAGTGTTGGGGGTGGGCAGAAAAGCAGGAACAGGTCGAACAGCCGAACTCATCACCTAAAGACATT
GTCCTCTGCACATGCTTCTTCATCCCGTTAA
AA sequence
>Potri.005G164000.3 pacid=42804337 polypeptide=Potri.005G164000.3.p locus=Potri.005G164000 ID=Potri.005G164000.3.v4.1 annot-version=v4.1
MMKFNCFSGPIGRKKKEKVDKQSSRTADFNTALKTLNIGLQHPVEPFESDGLKSTSFGVSFPLDVEKDSINVQVMSHESPVVNEAAYEGEDELEEDVSMK
RDLSDLDLQSHVANSGEEVSFPISARLDSSDSLDRMGNERYAKKDEKKVDEKGIDVIQSGHVSDPGIGKAEFWGSPKLKRSCSNLETSKFLRKIANQLPL
ASQYSEELQGLAEKLRDPRSPTSIISHCSADRVMLKKHSSSQVLPSRSRRLWWKLFLWSHRNLHKPWYVKPQPQAVSKVLNQQGGYSSDTLELDRALSKM
QSPGSFTRESMNKGRINNEEDSQSWNGFHAGISGLWPQNQWVAFSIESSPFSRVNKWVEDLETQPPPPDAHDDNNDVKSDNDIVFLPSPDTGRSPGRTTA
CPDFNFSEEILHANSVIQSLNSSSTVAHIAGIGLKAIPTISHFSSLRSVNLSNNVIVHITPGSLPKGLHTLNLSKNRIGTIEGLRDLIRLRVLDLSYNRI
FRLGQGLSNCTIIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLQALNLVGNPIQSNISDDQLRKAICGLLPKLVYLNKQPIK
PQRAREVLTDSVARAALGTSSSRSYRKKAVKGVTSSSSISSMHRGSVGGGQKSRNRSNSRTHHLKTLSSAHASSSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78230 Outer arm dynein light chain 1... Potri.005G164000
[exp]
0 1
AT4G12010 Disease resistance protein (TI... Potri.017G105201
[exp]
4.35 0.7750
AT4G00300 fringe-related protein (.1.2) Potri.014G088100
[exp]
4.69 0.7641
AT3G14390 Pyridoxal-dependent decarboxyl... Potri.005G246300
[exp]
15.09 0.7260
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Potri.010G070750
[exp]
22.91 0.6481
Potri.004G236100
[exp]
25.37 0.6646
AT1G24330 ARM repeat superfamily protein... Potri.008G177100
[exp]
26.85 0.7062
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Potri.014G052500
[exp]
28.53 0.6744
AT2G46140 Late embryogenesis abundant pr... Potri.002G165000
[exp]
29.12 0.7222 PM22.2
AT5G52510 GRAS SCL8 SCARECROW-like 8 (.1) Potri.017G142400
[exp]
29.54 0.6912
AT1G53590 NTMCTYPE6.1 ,NT... Calcium-dependent lipid-bindin... Potri.001G379800
[exp]
29.84 0.6389

Potri.005G164000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.