Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22310 101 / 4e-22 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097700 [exp] 1376 / 0 AT1G22310 105 / 2e-23 methyl-CPG-binding domain 8 (.1.2) Potri.001G312900 [exp] 219 / 1e-58 AT1G22310 110 / 1e-25 methyl-CPG-binding domain 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035631 [exp] 201 / 6e-53 AT1G22310 139 / 4e-35 methyl-CPG-binding domain 8 (.1.2) Lus10010764 [exp] 189 / 4e-48 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10033445 [exp] 93 / 2e-20 AT1G22310 79 / 9e-17 methyl-CPG-binding domain 8 (.1.2) Lus10020931 [exp] 84 / 3e-17 AT1G22310 78 / 3e-16 methyl-CPG-binding domain 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF01429 [poplar] [flax] MBD Methyl-CpG binding domain CL0081 [poplar] [flax] PF02178 [poplar] [flax] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Potri.005G164100.7 pacid=42805273 polypeptide=Potri.005G164100.7.p locus=Potri.005G164100 ID=Potri.005G164100.7.v4.1 annot-version=v4.1 ATGGCCACAGCCACCGTGGACTCCTCCGTTTGCAACTACCAGAATCAAGTCCACACCGAATCTCTCCTTCTAATCGACCTACGCCATCTTTCCCAACCCG AACTCCTCTCCCTCTCCTTCTGTTCCTCCTCCTCCTCCCTCCACCGTCTCCAAACGGACACCGCCGACGTCTCCACTCCTAAAATCGACCGTTCAGTCTT CAACGAGTCTGCTGGAAGCCGCAAACAAACTTTCTCACGCCTCCGCCTCGCCCCTCGCAACAATAACGCTTCCTCTTCTTCGAATTCAACTCCTGTTGTT CCCTATCAAATTACCGAACGACACCCTCTCGATGAAGAGAATTCACAGATAATTTATCTTCTCAAGTCGCTGTTTGGTTCTGATTCTCACTTTATTGAAA ATAACAACGAGAATAATCATAACCTAGTCTCCGTTCCTGTCATCTATAATGAATATATGCGTTTGCCTTGTACAAATAATGCGGAATTGCAAAATGTTGG CTTTAGTCAAGGAGGAGTAAAAAGCTTAGAGGTAAATCACTTGATTTCGACTCGAATTGCTGAATCTAGTTCAAAGAAAAGGAAACGAGGCAGGCCACGG AAGAATGAGAATGTCGATTTCGGTTATAACGAGTTAGAAGAGAGGAAAAAAATTGAGAATAAAACGATTGCTGTTGTATGTGACGATGTGGAAGTGCAGA ATAAGAAGAAAGAGGAGATGGAGATGGTGGGCAAGAATGGAGTGGCAGTGGACTTTGTGGCATTGGGGAATATGGAGGATCCGTATGGGGAGGAGTTGCG GAGGAGGACGGAGGGAATGCTTGGCTTTAGTCAAGGAGGAGTAAAAAGCTTAGAGGTAAATCACTTGATTTCGACTCGAATTGCTGAATCTAGTTCAACG AAAAGGAAGCGAGGCAGGCCACGGAAGAATGAGAATATCGATTTCGGTAATAACGAGTTAGTAGAGAGGAAAAAAATGGAGAATAAAACGATTGCTGTTG TGTGTGACGATGTGGAAGTGCAGAATAAGAAGAAAGAGGAGATGGAGATGGAGATGGTGAGCAAGAATGGTGTTGTAGTGGACTTTGTGGCATTGGGGAA TATGGAGGATCCGTATGGAGAGGAGTTGCGGAGGAGGACGGAGGGAATGCTTGGCTTTAGTCAAGGAGGAGTAAAAAGCTTAGAGGTAAATCACTTGATT TCGACTCGAATTGCTGAATCTAGTTCAAAGAAAAGGAAGCGAGGCAGGCCACGGAAGAATGAGAATGTCGATTTCGGTAATAACGAGTTAGTAGAGAGGG AAAAAATTGAGAATAAAACGATTGCTGTTGTGTGTGACGATGTGGAAGTGCAGAATAAGAAGAAAGAGGAGATGGAGATGGAGATGGTGAGCAAGAATGG AGTAGTAGTGGACTTTGTGGCATTGGGGAGTATGGAGGATCCGTATGGAGAGGAGTTGCGGAGGAGGACGGAGGGAATGCCTGGCTTTAGTCAAGGAGGA GTAAAAAGCTTAGAGGTAAATCACTTGATTTCGACTCGAATTGCTGAATCTAGTTCAAAGAAAAGGAAGCGAGGCAGGCCACGGAAGAATGAGAATGTCG ATTTCGGTAATAACGAGTTAGTAGAGAGGGGAAAAATTGAGAATAAAACGATTGTTGTTGTGTGTGACGATGTGGAAGTGCAGAATAAGAAGAAAGAGGA GATGGAGATGGTGAGCAAGAATGGAGTGGTAGTGGACTTTGTGGCATTGGGGAATATGGAAGATCCGTATGGGGAGGAGTTGCGGAGGAGGACGGAGGGA ATGCAATTGAAGGCAGAATTTTTAGGGTTTTTGGAAGGGTTCGAGGGTGAATGGGGGAGTACGAGAAAGAAGAGGAGGATTGTGGATGCTAGCTTGTTTG GGGATGCCCTGCCGATTGGGTGGAAGCTCTCTATCTGCGTCAAGAAGCAAGCCGGTCGTGTTTGGTTGGCTTGTACAAGATACATAAGCCCTAATGGGCT GCAGTTTGTGTCCTGCAAGGAAGTTTCATCGTATTTACTTTCCTTTTCTGGACTTCATGATGTAAGACGGTCGAATTTTGATCACATGGATGGCAGGATT AAGTTGACCGACAAAATAGCTACATCCATTTCTGCAGATCAAACATGTAAAGATGGCAAGAATGAGAATGATTTTATTAGTTATAAGGCATTGCCTGTCA CCTCTACATCTACTGAGACAGGGGGGTGTCCGAGGGAGGTTCAAACAGGGATGAATTATGAATGCCACAAGTGCACCTTGACTTTTGATGGGCAGGATGA CTTGCTACAGCACTTGCTATCATCTCATCAGCGGTCTCCAAAACAGCTTAAATGTGGGACATCAACAAATGAAGAGGTGATAATAAAAAATGGAAAGTAT GAATGTCAGTTTTGTCTTAAACTTTTTGAAGAAAGGCATCACTTCAATGGCCACCTTGGGAACCACATAAAAGATTATCTCAAGAAACTTGATGCTTCCA GCGACATAACCACTCAAAAGAATGATGAACCTGCATCTGTTGAAATTCCTTTTGGATCTGTAAAGATCCAAACATCGATTGACATTGACAGGGATTCTGA TGAAATAACTTCTAACACTAAAACCAATGGTGAAATAAATTCCATCATTCCATATTGTGAAATGAAGGCAAATACTTCTGTAGAAGCCTATTGTGGTAAG CAGGATAGAGCATCTAATATTAGCAATGATGAAGTGGGGGAGATGAATGAAGTTACTGACATTGTTGCTGCTGAAATTAGTGTTTGTTCAGAACCAGCCT TCTTGAGTAATGAGAATAATGCAATTCATAGATCTTCTGATGAAACAAATGTTCCCAAGTACTGCACCAACATTATCGATGATCTTGACTGTTCAGTTGC TGGTGATGTAAGGAACCTGGCCTGTATAAATTTGAATAGGGTTCCCCCTAGGCTAATTGAGGAACTCAATCAGGGGAGAGGTTCTGATAGTGGTTTACTT GCTCCAAATGCCAAGGAGAACATGTTTAATGATGACATTATTGAGGATAGGAATTGCTCTAGCACAATTGATAACATGGTAATTGATGATTGGGATGCAG ATGGAAAAGGTGAGCCTATTACTGGTTCTTGTGCTGCAATAGCAGAGAATGTTGCTGCTAATTTGAAGGAGCAAAGAAGTTCTGAAGGCTGTTCTGTCGG GCTTTTAAATTCCATTGCGGTGGAAACCATGCAGGAAAAAAGTTCTAAAGGGGATTTAACGGGTATTGAGAACAACATGAACAGTGTTTGTACTGGCATG TTAAATGAGAGCAAATTTGATGATGTTGGTAAACCTGGGACGAATGAGTTAACAAGTGTTTGCCGTGACAATAACACTGCACTGGTTGATGATAATGTGG TGATTAATGAACAAGGGAAAAATCATGGGGGCTGCCCAGTTATTCCATTTTTGAACGAGCAGATGCATCTCGCTGAAAATAATATCACTGGGACTCCTAA ATGCACAATAAGAGAACCCTGTCAAGAAGAGGAATCTGAAGGTGGCCTGCTTACTATATCTGGTAATGAGCAATCATTTGACTTAAAAGGTAATGTAATT AAGGTTTCCAAGGGCACAATAAATGTGGTTAATCACAATGAAGTTCTATGCCTTAAGAACAATGAGTTTGGCAGTGAGATTGATCAATCTGTGCAGACCT TAACTAATATTCAGGAAAGAAGTTCAAACATTTTTTCATTTTTTCCATCTACAAATGGACTAACATTTGCTTCAAAAGATGAGCAATCCCATGATGATGA GAATAGTATGAATCAGTTATCATGCACCACATCAGCGGAAGACAAACTACAGGAAGCTAAAACCTCCTGCAATGGAGAGTTATGTATTGCTTTCGGTGAC AATTGCACTGAACAGGATGCAGATATTGTGACAGGCACTGTGCAGGAAATTTGTTTTCTTTTTGCTGGGAATCAACATACATTGACTGCTAAAGATAATG CAACTGGTCCCTTCAATGGCACCATGGATGAGCTGAACCAGAAAATGGATTCCGTAGAGAGTGTACTTTGTCTATCTGGTGATGCGCCGATGCGGAGTGT TGAAAAGAATTTGCACACAGCATTTACAGGGTCAATTCAGGAGGAGCCGAGGGTAAAGAATACAGAAAATTCTAAGAAAGATGATTTGGGTCATGATTTT AGTGGCCACCCTGGACCAAATGAGAGTGTCGAATCTGAGTTTGTGTGGAGAAATGAAGAAAATGGTGGCCTGCGATGTGATTTTGCTGATACTTGTCAAC CAGTGCAAGCATCAGGTTTTTTCCCTCTGTATGATGCGGTTTCAGATAAGGGTGAAAGTGAACACTTTGGGGAGGCATATGGTGTTATATCAGGTTTTGA AGGGTTGAAATCGGGTGGCATGGAAAATATGGAATATAATCTTCTGACTTCTCAAGTGAGCTCTCATTCAGATGAATCCAAGGTTGTTTCATGTGATGCA GTTATACCTCAAGGGTTTGATTCTTCTGTTTGTCTTGAGAAGGGAGATTTGCCTTTTTTGCCAAAGAATGCAAGCAGGCACCACGTACCTGCTGTGTGTG TCTGGTGTGGAAGGGAGATTTGCCAGGAGGCTTTTGAATCTGAAGCACAAACAAGCACGATGGGTTTTATGTGTGCAGAGTGCGCTGCCAGGTTTTCAGG GCAATAA
AA sequence Show only first row Show all	>Potri.005G164100.7 pacid=42805273 polypeptide=Potri.005G164100.7.p locus=Potri.005G164100 ID=Potri.005G164100.7.v4.1 annot-version=v4.1 MATATVDSSVCNYQNQVHTESLLLIDLRHLSQPELLSLSFCSSSSSLHRLQTDTADVSTPKIDRSVFNESAGSRKQTFSRLRLAPRNNNASSSSNSTPVV PYQITERHPLDEENSQIIYLLKSLFGSDSHFIENNNENNHNLVSVPVIYNEYMRLPCTNNAELQNVGFSQGGVKSLEVNHLISTRIAESSSKKRKRGRPR KNENVDFGYNELEERKKIENKTIAVVCDDVEVQNKKKEEMEMVGKNGVAVDFVALGNMEDPYGEELRRRTEGMLGFSQGGVKSLEVNHLISTRIAESSST KRKRGRPRKNENIDFGNNELVERKKMENKTIAVVCDDVEVQNKKKEEMEMEMVSKNGVVVDFVALGNMEDPYGEELRRRTEGMLGFSQGGVKSLEVNHLI STRIAESSSKKRKRGRPRKNENVDFGNNELVEREKIENKTIAVVCDDVEVQNKKKEEMEMEMVSKNGVVVDFVALGSMEDPYGEELRRRTEGMPGFSQGG VKSLEVNHLISTRIAESSSKKRKRGRPRKNENVDFGNNELVERGKIENKTIVVVCDDVEVQNKKKEEMEMVSKNGVVVDFVALGNMEDPYGEELRRRTEG MQLKAEFLGFLEGFEGEWGSTRKKRRIVDASLFGDALPIGWKLSICVKKQAGRVWLACTRYISPNGLQFVSCKEVSSYLLSFSGLHDVRRSNFDHMDGRI KLTDKIATSISADQTCKDGKNENDFISYKALPVTSTSTETGGCPREVQTGMNYECHKCTLTFDGQDDLLQHLLSSHQRSPKQLKCGTSTNEEVIIKNGKY ECQFCLKLFEERHHFNGHLGNHIKDYLKKLDASSDITTQKNDEPASVEIPFGSVKIQTSIDIDRDSDEITSNTKTNGEINSIIPYCEMKANTSVEAYCGK QDRASNISNDEVGEMNEVTDIVAAEISVCSEPAFLSNENNAIHRSSDETNVPKYCTNIIDDLDCSVAGDVRNLACINLNRVPPRLIEELNQGRGSDSGLL APNAKENMFNDDIIEDRNCSSTIDNMVIDDWDADGKGEPITGSCAAIAENVAANLKEQRSSEGCSVGLLNSIAVETMQEKSSKGDLTGIENNMNSVCTGM LNESKFDDVGKPGTNELTSVCRDNNTALVDDNVVINEQGKNHGGCPVIPFLNEQMHLAENNITGTPKCTIREPCQEEESEGGLLTISGNEQSFDLKGNVI KVSKGTINVVNHNEVLCLKNNEFGSEIDQSVQTLTNIQERSSNIFSFFPSTNGLTFASKDEQSHDDENSMNQLSCTTSAEDKLQEAKTSCNGELCIAFGD NCTEQDADIVTGTVQEICFLFAGNQHTLTAKDNATGPFNGTMDELNQKMDSVESVLCLSGDAPMRSVEKNLHTAFTGSIQEEPRVKNTENSKKDDLGHDF SGHPGPNESVESEFVWRNEENGGLRCDFADTCQPVQASGFFPLYDAVSDKGESEHFGEAYGVISGFEGLKSGGMENMEYNLLTSQVSSHSDESKVVSCDA VIPQGFDSSVCLEKGDLPFLPKNASRHHVPAVCVWCGREICQEAFESEAQTSTMGFMCAECAARFSGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.005G164100 [exp]	0	1
AT3G15120			P-loop containing nucleoside t...		Potri.011G141400 [exp]	1.00	0.9668
AT5G43490			unknown protein		Potri.001G319500 [exp]	2.00	0.9638
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	2.00	0.9600
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.010G132600 [exp]	3.16	0.9584
AT5G48610			unknown protein		Potri.017G058701 [exp]	4.24	0.9613
AT5G43490			unknown protein		Potri.017G058500 [exp]	6.00	0.9540
					Potri.017G058200 [exp]	6.70	0.9338
AT5G43490			unknown protein		Potri.017G058600 [exp]	6.92	0.9436
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G229300 [exp]	7.48	0.9064
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Potri.010G227500 [exp]	8.18	0.8999

Compare expression of checked genes

Potri.005G164100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.