Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34780 363 / 3e-126 ATAPRL4 APR-like 4 (.1.2) AT4G08930 289 / 2e-97 ATAPRL6 APR-like 6 (.1) AT3G03860 141 / 1e-39 ATAPRL5 APR-like 5 (.1) AT5G18120 128 / 7e-35 ATAPRL7 APR-like 7 (.1) AT3G54960 53 / 1e-07 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT2G47470 51 / 5e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT2G32920 49 / 2e-06 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 49 / 3e-06 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G21750 47 / 1e-05 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G16110 43 / 0.0002 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097601 [exp] 593 / 0 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.013G057100 [exp] 140 / 3e-39 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.019G035700 [exp] 135 / 2e-37 AT5G18120 277 / 4e-93 APR-like 7 (.1) Potri.008G040100 [exp] 55 / 3e-08 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.014G122800 [exp] 51 / 4e-07 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 51 / 5e-07 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.005G179000 [exp] 47 / 8e-06 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G082100 [exp] 47 / 9e-06 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.014G160000 [exp] 44 / 0.0001 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036486 [exp] 343 / 7e-118 AT1G34780 272 / 2e-90 APR-like 4 (.1.2) Lus10010354 [exp] 331 / 9e-114 AT1G34780 268 / 2e-89 APR-like 4 (.1.2) Lus10020928 [exp] 306 / 2e-103 AT1G34780 259 / 2e-85 APR-like 4 (.1.2) Lus10033449 [exp] 305 / 5e-103 AT1G34780 260 / 8e-86 APR-like 4 (.1.2) Lus10005703 [exp] 130 / 2e-35 AT3G03860 310 / 7e-106 APR-like 5 (.1) Lus10020283 [exp] 118 / 9e-31 AT3G03860 296 / 3e-100 APR-like 5 (.1) Lus10036337 [exp] 51 / 6e-07 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10037403 [exp] 51 / 7e-07 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10010274 [exp] 50 / 1e-06 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10029681 [exp] 47 / 2e-05 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Potri.005G164200.2 pacid=42804402 polypeptide=Potri.005G164200.2.p locus=Potri.005G164200 ID=Potri.005G164200.2.v4.1 annot-version=v4.1 ATGATGCAGACTAGGGTTTGGCAGACGCGGATCTTGGTGTCGTTGATGATCTACGGGAGTCTAATGTTAATGTGCGCCACCGCCGCCTCCTCCAATACGG TTTCGATTTGTCCAATCGAGTCCGTCACAGATTCGATCTTTGGGTTTCGAGATCGAAACTGCGTCGTTTCTGGTGTTGATGAATCCCCCTTTTTCCCTGG TTTCACCGAGGGAGACGAGGTTTCATTACAGAAGGCACTAAATTTAGTTCAAAAGAATAGTCATGAATACGTGGCTTTGCTCTTCTATGCATCATGGTGC CCTTTTTCTAGGACTTTTAGACCAAGCTTCTCTATCCTTTCTTCGCTGTATCCCTCGATTCCCCATTTTGCGATTGAAGAATCATCCATCAGGCCAAGCA TACTATCCAAGTATGGAGTTCATGGATTTCCTACTCTTTTCCTATTTAATTCTACTATGCGTGTTTGCTATCATGGCTCCCGGACTCTTGGTTCTCTCAT CGCTTTCTACAGTGATGTTACTGGTATCAAGACTGCTTCCCTGGATAAAGGATCGCTGGACAAAATTGGACGTGCATCACACCATGAAAAACATGATGCC CCTGAGCAAGAAAGTTGCCCATTCTCGTGGGCAAGATCTCCAGAGAACTTGTTTAGGGAGGAGACATATTTGGCTCTGGCAACAACATTTGTGCTTCTGA GGCTGTTTTACTGGACTTTCCCTACCATGCTTGCTTTTGCACAATTTACTTGGAGGCGGCACATGCAGAACATGAGACTGGAGAGTTTGTTAGAGCATCC CCGGGCTTATCTGAATCGAGCAATACAGCTATTTAATTCTTTGAACGAGCCTTGCAAGAAGAGTAATTTGCAGGAAGGGGCAATGAATGCCAGGGCTTGG GCTTCCAAGTCCCTTGCTACAGTTTCAATAGGGGATGCAAGCACCAGCAGGGGTGCACCTGTTTGTGAATGTCGATGA
AA sequence Show only first row Show all	>Potri.005G164200.2 pacid=42804402 polypeptide=Potri.005G164200.2.p locus=Potri.005G164200 ID=Potri.005G164200.2.v4.1 annot-version=v4.1 MMQTRVWQTRILVSLMIYGSLMLMCATAASSNTVSICPIESVTDSIFGFRDRNCVVSGVDESPFFPGFTEGDEVSLQKALNLVQKNSHEYVALLFYASWC PFSRTFRPSFSILSSLYPSIPHFAIEESSIRPSILSKYGVHGFPTLFLFNSTMRVCYHGSRTLGSLIAFYSDVTGIKTASLDKGSLDKIGRASHHEKHDA PEQESCPFSWARSPENLFREETYLALATTFVLLRLFYWTFPTMLAFAQFTWRRHMQNMRLESLLEHPRAYLNRAIQLFNSLNEPCKKSNLQEGAMNARAW ASKSLATVSIGDASTSRGAPVCECR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Potri.005G164200 [exp]	0	1
AT3G24240			Leucine-rich repeat receptor-l...		Potri.002G070900 [exp]	3.16	0.9133
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	3.46	0.9269
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	3.87	0.9308
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	4.47	0.9298
AT3G13275			unknown protein		Potri.001G469401 [exp]	4.89	0.9215
AT2G14045			unknown protein		Potri.019G014100 [exp]	5.91	0.9229
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.010G076500 [exp]	6.32	0.9253
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	6.32	0.9206	ARAC2.1
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	7.34	0.9196	ATEB1.4
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	10.90	0.9209

Compare expression of checked genes

Potri.005G164200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.