Plant FIBer expression Database

Potri.005G164300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G34770 322 / 2e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033452
[exp]
326 / 2e-113 AT1G34770 266 / 6e-90 unknown protein
Lus10020925
[exp]
322 / 8e-111 AT1G34770 260 / 1e-86 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF01454 MAGE MAGE family
Representative CDS sequence
>Potri.005G164300.2 pacid=42803756 polypeptide=Potri.005G164300.2.p locus=Potri.005G164300 ID=Potri.005G164300.2.v4.1 annot-version=v4.1
ATGGCAAATCACAGTGAAGATCTCTCCCAATTAAACATTTCGATAGAGGAAAAGGACAAGCTCGTTGCTGAAGTGATCCGCTACGTGCTGTTCAAAAATC
ACCAGAATTCAGGGTCTCCAATTAAGAGAGATGAGCTAACCCAGATTGTTACTAAAAACTATAGGCACCGTACCCTTCCCGCTGTTGTTATTGATGAGGC
TAAACACAAGCTTGCCAGCGTTTTCGGGTTTGAAATGCGTGAGCTTCAAAGGGCTCGCCCTTCCTCGACCAATCAGGGTCGTGCTTCTTCCCAACAAAGT
GTTGCTGATGCTAAATCCTATGTTCTCATAAGCCAACTACCTGCTGATGTTTATAGGAAATATGTTGAGGATGTAAACTCTGCTCATGTGACTGGTTTTA
CTTTTGTCGTGATTAGTGTTGTGCACCTTGCTGGAGGCAAAATCCCAGAGGAAAATCTCTGGCATCACTTGAAGAAAATGGGATTGTTTGAAAACGATGA
AAGCCATCCTGCCCTTGGAAACATTAAGCAAGCATTGGAAACACTTGTCCAGCAAAGATATTTGCAGAAGGACAAAATCAGTGGCCCTGAAGGCAACACT
TTGGTTTACGAGCTTGCTGAGAGAGCTCTAGATGGACCAGTCAACGAGAGAGTTAAAGAATACATATCACAGGTAGTGAAAAGAGATGTGGCCTCTGCAG
TAATCAATTAG
AA sequence
>Potri.005G164300.2 pacid=42803756 polypeptide=Potri.005G164300.2.p locus=Potri.005G164300 ID=Potri.005G164300.2.v4.1 annot-version=v4.1
MANHSEDLSQLNISIEEKDKLVAEVIRYVLFKNHQNSGSPIKRDELTQIVTKNYRHRTLPAVVIDEAKHKLASVFGFEMRELQRARPSSTNQGRASSQQS
VADAKSYVLISQLPADVYRKYVEDVNSAHVTGFTFVVISVVHLAGGKIPEENLWHHLKKMGLFENDESHPALGNIKQALETLVQQRYLQKDKISGPEGNT
LVYELAERALDGPVNERVKEYISQVVKRDVASAVIN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G34770 unknown protein Potri.005G164300
[exp]
0 1
AT5G48820 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibit... Potri.001G314000
[exp]
1.00 0.8383
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.008G203500
[exp]
3.87 0.8267
AT3G01860 unknown protein Potri.001G332500
[exp]
4.47 0.8118
AT5G58130 ROS3 REPRESSOR OF SILENCING 3, RNA-... Potri.018G151300
[exp]
6.00 0.8340
AT2G18050 HIS1-3 histone H1-3 (.1.2) Potri.007G014200
[exp]
13.41 0.7983 HON905,HIS1.1
AT5G45200 Disease resistance protein (TI... Potri.019G070350
[exp]
14.96 0.7570
AT2G24360 Protein kinase superfamily pro... Potri.018G001900
[exp]
21.16 0.7649
AT3G45880 2-oxoglutarate (2OG) and Fe(II... Potri.009G025400
[exp]
21.33 0.8077
AT3G07870 F-box and associated interacti... Potri.001G396800
[exp]
22.27 0.8018
AT5G20200 nucleoporin-related (.1) Potri.018G129900
[exp]
24.71 0.7917

Potri.005G164300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.