Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34760 416 / 3e-149 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 413 / 5e-148 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT1G26480 409 / 3e-146 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 397 / 1e-141 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT5G38480 362 / 1e-127 RCI1, GRF3 general regulatory factor 3 (.1.2) AT3G02520 355 / 9e-125 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT1G35160 347 / 1e-121 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT1G78300 342 / 8e-120 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT4G09000 341 / 4e-119 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT5G16050 337 / 1e-117 GF14UPSILON, GRF5 general regulatory factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097500 [exp] 477 / 4e-173 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.011G110900 [exp] 418 / 9e-150 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.008G095000 [exp] 414 / 2e-148 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.001G392200 [exp] 414 / 5e-148 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.010G159300 [exp] 412 / 2e-147 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.017G113300 [exp] 357 / 1e-125 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.004G101700 [exp] 355 / 8e-125 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.002G099800 [exp] 348 / 4e-122 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 346 / 2e-121 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036896 [exp] 418 / 1e-149 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10026660 [exp] 412 / 3e-147 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10004652 [exp] 410 / 1e-146 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10029835 [exp] 403 / 3e-143 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 402 / 4e-143 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10036471 [exp] 399 / 3e-142 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10017650 [exp] 397 / 3e-141 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 385 / 1e-136 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 391 / 3e-136 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10013908 [exp] 379 / 1e-131 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [poplar] [flax] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Potri.005G164500.3 pacid=42803348 polypeptide=Potri.005G164500.3.p locus=Potri.005G164500 ID=Potri.005G164500.3.v4.1 annot-version=v4.1 ATGGAGAGGGAGAGAGAACAACAGGTATACTTGGCGAGACTTGCAGAGCAAGCTGAGAGATATGATGAGATGGTAGAAGCAATGAAGAAAGTTGCAAAGT TGGATGTGGAATTGACAGTGGAGGAGAGGAATCTGGTGTCCGTGGGTTACAAGAATGTCATTGGCGCTAGAAGGGCATCGTGGAGGATACTTTCTTCCAT TGAACAGAAGGAGGAGGCCAAGGGGAATGAACAGAATGTGAAAAGGATAAAGGAGTACATGCAGAGTGTTGAAGATGAGCTTGCAAAGATCTGCAATGAT ATATTATCAGTCATTGATCAGCATCTCATCCCATCCTCTTCAACTGGGGAATCTACTGTCTTTTACTATAAGATGAAGGGAGACTATTATCGTTATTTGG CTGAGTTTAAAGGTGCTGATGAACGTAAAGAAGCTGCGGATCAGTCCCTCAAGGCTTATGAGGCAGCAACCTCTACTGCGATCTCAGATTTGCTTCCAAC TCATCCAATTAGACTTGGCCTGGCTCTAAACTTCTCTGTTTTCTACTATGAGATTTTGAACTCCCCCGAAAGGGCCTGCCGCCTGGCTAAACAAGCATTT GATGATGCTATAGCAGAACTTGATAGCCTCAATGAGGACTCCTACAAGGACAGTACCCTTATCATGCAGCTACTTAGGGACAATCTCACTTTATGGACCT CAGATCTGCCAGAGGAAGGAGGTGAGCAATCTGCAGCTGATGAACCTAAGGCAGTGAATTAG
AA sequence Show only first row Show all	>Potri.005G164500.3 pacid=42803348 polypeptide=Potri.005G164500.3.p locus=Potri.005G164500 ID=Potri.005G164500.3.v4.1 annot-version=v4.1 MEREREQQVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYMQSVEDELAKICND ILSVIDQHLIPSSSTGESTVFYYKMKGDYYRYLAEFKGADERKEAADQSLKAYEAATSTAISDLLPTHPIRLGLALNFSVFYYEILNSPERACRLAKQAF DDAIAELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPEEGGEQSAADEPKAVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	0	1
AT4G24820			26S proteasome, regulatory sub...		Potri.012G093500 [exp]	2.00	0.8162
AT5G08060			unknown protein		Potri.004G123700 [exp]	3.87	0.7609
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	4.47	0.7485	ATFYPP3.2
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Potri.019G050100 [exp]	5.47	0.7449
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	6.32	0.7636	RPT4.2
AT3G25545			unknown protein		Potri.010G134600 [exp]	7.21	0.7560
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.012G071700 [exp]	7.28	0.6350	CDPK1.3
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	7.48	0.7329	ATS9.3
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	8.94	0.7164
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.005G204100 [exp]	10.95	0.6859

Compare expression of checked genes

Potri.005G164500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.