Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRY1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08920 999 / 0 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT1G04400 622 / 0 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT3G15620 160 / 6e-42 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT5G24850 111 / 2e-25 CRY3 cryptochrome 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096900 [exp] 1241 / 0 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.010G071200 [exp] 658 / 0 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.008G166632 [exp] 221 / 5e-68 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.003G060000 [exp] 162 / 9e-43 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.006G277500 [exp] 107 / 4e-24 AT5G24850 781 / 0.0 cryptochrome 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033446 [exp] 1061 / 0 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 900 / 0 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10011822 [exp] 638 / 0 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 621 / 0 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10022095 [exp] 113 / 6e-26 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10020878 [exp] 106 / 7e-24 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 100 / 6e-23 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10000521 [exp] 57 / 3e-08 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00875 [poplar] [flax] DNA_photolyase DNA photolyase CL0039 [poplar] [flax] PF03441 [poplar] [flax] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [poplar] [flax] PF12546 [poplar] [flax] Cryptochrome_C Blue/Ultraviolet sensing protein C terminal
Representative CDS sequence Show only first row Show all	>Potri.005G164700.1 pacid=42802620 polypeptide=Potri.005G164700.1.p locus=Potri.005G164700 ID=Potri.005G164700.1.v4.1 annot-version=v4.1 ATGTCAGGAGGTGGGTGTAGTATAGTTTGGTTCAGAAGAGATCTAAGGGTAGAAGATAACCCGGCACTTGCAGCTGGTGTAAGAGCAGGTGCTGTTGTTG CTGTGTTTGTATGGGCACCCGAGGAGGAAGGCCATTATTATCCCGGTAGGGTCTCAAGGTGGTGGCTTAAACAAAGTTTGGCTCATCTTGACTCTTCTTT AAGGAGTCTTGGTACTTCTCTTGTTACTAAGAGATCAACTGATAGTGTTTCTTCTCTTCTTGAGGTTGTCAAATCTACCGGTGCTACTCAGCTTTTATTC AACCACTTATATGACCCCTTGTCACTGGTTAGGGATCACCGGGCAAAGGAGATTTTGACTGCTCAAGGTATTACTGTAAGATCTTTTAACGCGGACTTGC TTTATGAACCATGGGATGTTAATGATGCCCAGGGCCGTCCGTTCACAACCTTTGACACTTTCTGGGAAAGATGCCTCAGCATGCCTTTTGATCCAGAGGC TCCACTTCTCCCGCCTAAGAGGATTATTTCGGGTGATGTATCCAGATGCCCTTCAGTCACGCTGGTATTTGAAGATGAATCAGAGAAAGGAAGCAATGCA CTTCTTGCAAGAGCATGGTCACCTGGATGGAGCAATGCTGATAGGGCTTTGACCACTTTCATTAACGGACCACTAATTGAGTACTCTATGAATCGTAGAA AGGCTGATAGCGCCACAACCTCATTTCTCTCACCACACTTGCATTTTGGGGAGGTGAGTGTGAGAAAAGTCTTCCATCTTGTTCGCATCAAGCAGGTTCT GTGGGCAAATGAAGGGAACAGGGCCGGCGAAGAGAGTGTAAACTTGTTTATCAAGTCAATTGGTCTTAGGGAATATTCAAGATACTTGAGTTTCAACCAT CCTTGCACTCATGAAAGGCCTCTTCTTGGGCACCTTAAGTTTTTCCCTTGGGTTGTGGACGAAGGCTATTTTAAGGCATGGAGACAAGGTAGAACAGGTT ATCCATTAGTTGACGCTGGAATGAGAGAATTGTGGGCTGCTGGTTGGCTGCATGATCGTATACGTGTGGTAGTTGCTAGTTTCTTTGTGAAGGTTCTACA ACTTCCATGGAGATGGGGAATGAAGTATTTTTGGGATACCCTATTGGATGCAGATTTAGAGAGCGATGCTCTTGGGTGGCAATACATAACCGGCACTCTC CCAGACAGCCGTGAGTTTGATCGCATAGATAATCCACAGTTTGAGGGTTACAAATTTGACCCGAATGGAGAATATGTACGCCGGTGGCTTCCTGAACTTG CTAGGCTACCAACTGAATGGATACACCACCCATGGAATGCACCTGAATCTGTACTCCAAGCTGCCGGAATTGAGCTGGGATCAAATTACCCTCTCCCTAT TGTAGGGATAGATGCAGCAAAGGTCAGGTTGGAAGAAGCACTTTCAGAAATGTGGCAGCAAGAAGCTGCTTCAAGAGCTGCAATTGAGAATGGAACAGAG GAAGGGCTTGGAGACTCCTCTGAATCAGCCCCATTTGCCTTCCCCGAAGACATACATATGGAGGAAAACCATGAGCCTGTGAGAAACAATCCTCCTGCTA CAAATCGTCGCTATGAGGATCAGATGGTCCCAAGCATGACATCTTCCTTTCTGAGAATTGAAGACGAAGAAACTTCTGATGTACGCAATTCTACAGGAGA TGGCAGAGCAGAGGTGCCAAGAGATGTAAATGTGAATCAAGAACCAAGAAGAGACGCTTTGAACCAGGGGTTTGTTCAAACTGTTCGTAATAACACTGCT TTGTCACCATTTAATATTTCGAGAGGTCTGACAAATGTTGAAGACTCGACCGCAGAGTCTTCAAGTAGTGGTAGGAGAGAGAGGGATGGAGGTATAGTTC CAGTTTGGTCCCCTCCAACTTCTAGTTACTCAGAGCAGTTTGTTGGTGATGACAATGGAATTGGAGCAACTTCTTCTTACTTGCAGAGGCATCCACAGTC TCACCAGATAATCAATTGGAGGCGGCTATCTCAAACTGGGTAA
AA sequence Show only first row Show all	>Potri.005G164700.1 pacid=42802620 polypeptide=Potri.005G164700.1.p locus=Potri.005G164700 ID=Potri.005G164700.1.v4.1 annot-version=v4.1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKSTGATQLLF NHLYDPLSLVRDHRAKEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDESEKGSNA LLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNH PCTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTL PDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTE EGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETSDVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNTA LSPFNISRGLTNVEDSTAESSSSGRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSSYLQRHPQSHQIINWRRLSQTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.005G164700 [exp]	0	1	CRY1.1
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	3.60	0.9757
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	4.89	0.9627
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.003G122800 [exp]	8.36	0.9592
AT3G26070			Plastid-lipid associated prote...		Potri.003G020700 [exp]	9.16	0.9553
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	9.21	0.9623
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	9.69	0.9650
AT3G11210			SGNH hydrolase-type esterase s...		Potri.006G100300 [exp]	11.13	0.9625	CPRD49.3
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	13.67	0.9539
AT3G02690			nodulin MtN21 /EamA-like trans...		Potri.012G145300 [exp]	13.67	0.9564
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.002G227300 [exp]	13.78	0.9586	ATCSLB05.1

Compare expression of checked genes

Potri.005G164700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.