Plant FIBer expression Database

Potri.005G165100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G34630 92 / 1e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G096500
[exp]
108 / 2e-29 AT1G34630 667 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034188
[exp]
100 / 1e-26 AT1G34630 681 / 0.0 unknown protein
Lus10043395
[exp]
70 / 8e-16 AT1G34630 374 / 2e-128 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G165100.1 pacid=42802495 polypeptide=Potri.005G165100.1.p locus=Potri.005G165100 ID=Potri.005G165100.1.v4.1 annot-version=v4.1
ATGTGGACGTGCCTGCTCTTTAGAATCTTCAGGTGGCGTACCACTCCGATGGTGGCATTGGGGACGTTCCCTATTGAGAAGAAAAGCACGCGGATTGAAA
TATCGCTTTATTGTCTTGCTCGGGCAATTGAAAACTTCTTTAACTACATGGTAGATGCAGGACATTTGCCGCAGTCCAATAATTTGAAGAGACCTGATGT
GGTGGTTTTTTCAGCATCTCGACATCTATAA
AA sequence
>Potri.005G165100.1 pacid=42802495 polypeptide=Potri.005G165100.1.p locus=Potri.005G165100 ID=Potri.005G165100.1.v4.1 annot-version=v4.1
MWTCLLFRIFRWRTTPMVALGTFPIEKKSTRIEISLYCLARAIENFFNYMVDAGHLPQSNNLKRPDVVVFSASRHL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G34630 unknown protein Potri.005G165100
[exp]
0 1
AT3G02890 RING/FYVE/PHD zinc finger supe... Potri.003G091000
[exp]
8.94 0.7696
AT1G28710 Nucleotide-diphospho-sugar tra... Potri.015G110600
[exp]
18.02 0.7207
Potri.010G036000
[exp]
19.23 0.6783
AT3G59510 Leucine-rich repeat (LRR) fami... Potri.017G028400
[exp]
19.89 0.6847
Potri.017G096366
[exp]
22.04 0.6648
Potri.007G062362
[exp]
23.06 0.7093
AT2G31470 DOR DROUGHT TOLERANCE REPRESSOR, F... Potri.001G458400
[exp]
24.73 0.7276
AT3G12410 Polynucleotidyl transferase, r... Potri.011G116000
[exp]
31.46 0.6985
AT5G13750 ZIFL1 zinc induced facilitator-like ... Potri.010G248401
[exp]
31.52 0.7163
AT4G15417 ATRTL1 RNAse II-like 1 (.1) Potri.002G226700
[exp]
44.59 0.7130

Potri.005G165100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.