Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64970 499 / 7e-176 Mitochondrial substrate carrier family protein (.1) AT1G78180 434 / 2e-150 Mitochondrial substrate carrier family protein (.1) AT4G32400 135 / 1e-35 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G51050 124 / 4e-31 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G55640 120 / 1e-30 Mitochondrial substrate carrier family protein (.1) AT3G53940 118 / 1e-29 Mitochondrial substrate carrier family protein (.1) AT2G37890 116 / 7e-29 Mitochondrial substrate carrier family protein (.1) AT4G01100 113 / 6e-28 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G61810 112 / 2e-27 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G07320 111 / 2e-26 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093300 [exp] 475 / 2e-166 AT5G64970 516 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 136 / 8e-36 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 134 / 3e-35 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 128 / 4e-33 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 123 / 2e-31 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.016G103300 [exp] 119 / 5e-30 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 119 / 8e-30 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 118 / 1e-29 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 116 / 7e-29 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014334 [exp] 454 / 5e-156 AT5G64970 499 / 7e-174 Mitochondrial substrate carrier family protein (.1) Lus10026043 [exp] 449 / 8e-156 AT5G64970 482 / 8e-169 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 132 / 3e-34 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 131 / 7e-34 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 128 / 3e-33 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 125 / 5e-32 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 124 / 4e-31 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 124 / 1e-30 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 122 / 2e-30 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 121 / 6e-30 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.005G165200.1 pacid=42803812 polypeptide=Potri.005G165200.1.p locus=Potri.005G165200 ID=Potri.005G165200.1.v4.1 annot-version=v4.1 ATGCCAGGATTTGAGATATGGCCGAGAAATTCACAATCCCAAACTCCATCCTCAATAGATTTAACTCCCAGCTCTTCTAGCTCATCCACTCTCGGTGGCA TATTTCTGGAGCCCACCGTTTATTCTTCTACTGTTAATTTTATTTCTCATAAATGCTCTTCAATCACTATTTCAAATCCCATTTCCTTTTATAAACACGC GAATTTCGGGGGCTTAAAGAGAGGAAGGAGGAGTAGAGGTATTAATGAAGTGGTGGTTAGTGGTGTTTTTCTGTCAGTGAGCTTGAGAAATGATGGGCTC CTGCAGGAATCTAAGGTGTGTTTGGTTCAAAACGAAGATAGCAAGAGCCTGGAGGAGGAGGATAAGGTGGCAGAGGGAGGTAATATTGTTTTGGAGAGTA AAGAGAACCGGAAGGTTAAGGCGCGAGGAGGTTTTGCTATGAATACCACTAAGCATCTGTGGGCTGGTGCCATTGCTGCCATGGTTTCAAGAACTTGTGT GGCACCGCTTGAGCGATTAAAACTGGAATATATAGTTCGCGGTGAGCAAAAGAATATTGTTGAGCTAATCAAGACAATTGCTACTACTCAAGGCTTGAAG GGTTTTTGGAAAGGGAATCTTGTTAACATTCTTCGCACTGCTCCATTTAAAGCGGTCAATTTTTGTGCTTATGACACATATCGGAAGCAACTGCTTAGAT TCTCAGGAAATGAGGAAACAACGAATTTCGAAAGGTTCATTGCTGGTGCTGGTGCTGGCATTACTGCGACAATTCTCTGTTTACCACTTGACACGATCCG GACCAAGATAGTTGCACCTGGTGGAGAAGCTTTGGGTGGTGTAATTGGTGCTTTTCGCCACATGATACAAACTGAAGGTTTCTTTTCACTTTACAAGGGC TTAGTACCTTCTATCTTAAGTGTGGCACCATCAGGGGCAGTTTTCTATGGTGTGTATGACATACTGAAATCAGCTTATCTTCATTCACCGGAAGGTCAGA AGAGACTTCAGTATATGAGCCATCACGGGCAGGAATTAAATGCCTTGGACCAACTGGAGTTGGGACCAATCAGGACATTAGTGTATGGGGCAATTGCTGG TGCTTGTGCAGAATTTTCTACATACCCATTTGAAGTTGTGAGGAGACGGCTTCAATTGCAAGTCCGGGCTACCAAGATGAGTGCATTGGTGACCTGTGTC AAGATAGTTGAGCAAGGAGGAATTCCAGCTCTTTATGCTGGACTGTTTCCCAGCCTGCTGCAGGTACTTCCTTCAGCTGCAATTAGTTACTTCGTCTATG AGTTTATGAAGATTGTTCTCAAAGTGGAATGA
AA sequence Show only first row Show all	>Potri.005G165200.1 pacid=42803812 polypeptide=Potri.005G165200.1.p locus=Potri.005G165200 ID=Potri.005G165200.1.v4.1 annot-version=v4.1 MPGFEIWPRNSQSQTPSSIDLTPSSSSSSTLGGIFLEPTVYSSTVNFISHKCSSITISNPISFYKHANFGGLKRGRRSRGINEVVVSGVFLSVSLRNDGL LQESKVCLVQNEDSKSLEEEDKVAEGGNIVLESKENRKVKARGGFAMNTTKHLWAGAIAAMVSRTCVAPLERLKLEYIVRGEQKNIVELIKTIATTQGLK GFWKGNLVNILRTAPFKAVNFCAYDTYRKQLLRFSGNEETTNFERFIAGAGAGITATILCLPLDTIRTKIVAPGGEALGGVIGAFRHMIQTEGFFSLYKG LVPSILSVAPSGAVFYGVYDILKSAYLHSPEGQKRLQYMSHHGQELNALDQLELGPIRTLVYGAIAGACAEFSTYPFEVVRRRLQLQVRATKMSALVTCV KIVEQGGIPALYAGLFPSLLQVLPSAAISYFVYEFMKIVLKVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64970			Mitochondrial substrate carrie...		Potri.005G165200 [exp]	0	1
AT4G21720			unknown protein		Potri.004G041700 [exp]	6.70	0.8356
AT2G23070			Protein kinase superfamily pro...		Potri.005G146000 [exp]	9.11	0.8101
AT1G50575			Putative lysine decarboxylase ...		Potri.008G180300 [exp]	29.86	0.8489
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Potri.018G128300 [exp]	43.79	0.7837	ARP6.1,ARP906
AT3G57280			Transmembrane proteins 14C (.1...		Potri.001G139800 [exp]	45.23	0.8262
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.006G203700 [exp]	45.60	0.8346
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Potri.019G031900 [exp]	59.28	0.8081
AT2G42080			Chaperone DnaJ-domain superfam...		Potri.016G045401 [exp]	64.26	0.8367
AT1G78620			Protein of unknown function DU...		Potri.011G105700 [exp]	119.21	0.7919
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.012G105900 [exp]	169.70	0.7800	CLPC.1

Compare expression of checked genes

Potri.005G165200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.