Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35780 357 / 2e-124 unknown protein AT1G78150 355 / 8e-124 unknown protein AT4G39860 348 / 8e-121 unknown protein AT2G22270 226 / 1e-72 unknown protein AT2G22260 57 / 5e-09 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095300 [exp] 543 / 0 AT1G35780 364 / 2e-127 unknown protein Potri.005G076000 [exp] 373 / 1e-130 AT4G39860 354 / 3e-123 unknown protein Potri.007G092400 [exp] 349 / 3e-121 AT4G39860 384 / 4e-135 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033456 [exp] 455 / 6e-163 AT1G35780 362 / 1e-126 unknown protein Lus10020921 [exp] 448 / 2e-160 AT1G35780 367 / 1e-128 unknown protein Lus10041695 [exp] 367 / 4e-128 AT4G39860 399 / 1e-140 unknown protein Lus10024053 [exp] 368 / 5e-121 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10009931 [exp] 93 / 4e-24 AT1G35780 107 / 2e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13266 [poplar] [flax] DUF4057 Protein of unknown function (DUF4057)
Representative CDS sequence Show only first row Show all	>Potri.005G165500.1 pacid=42802313 polypeptide=Potri.005G165500.1.p locus=Potri.005G165500 ID=Potri.005G165500.1.v4.1 annot-version=v4.1 ATGGAGAGGAGCACTCCGGTTAGGAAACCACACACTTCCACTGCAGATCTGCTCACGTGGTCCGAGACTCCGCCACCTGATTCTCCCTCCGTTGGCTCCG CTCCTCGCCCTACTCGGTCCCACCAGCCTTCAGATGGGATCAGTAAGGTGGTGTTTGGAGGCCAAGTTACCGAGGAGGAGTTCGAGAGCTTAAATAAACG GAAACCTTGTTCTGGGTATAAAATGAAGGAGATGACTGGCAGTGGCATTTTTGCAGCCAATGGAGAAGATGATACTGCCGAATCTGGCAGTGCCAACCCC ATTCCTAACAGCAAAACAGGATTGCGAATGTACCAGCAAGCAATTGCTGGAATCAGTCACATTTCATTTGCAGAGGATGATAGTGTTTCTCCCAAAAAGC CTACTACTCTGCCCGAGGTAGCAAAACAACGGGAGTTAAGTGGAACCTTAGAAAGTGAATCCGATGCCAAGTTGAAGAAGCAGATCTCCGGTGCCAAGTC CAAAGAGCTCAGTGGACATGACATCTTTGCACCCCCTCCTGAAATTTTACCACGGCCGACAACTGTGCGTGCTTTGGCTTTGCAAGAAAGCATCCAATTG GGTGAACCGTCTCCGCATGATCCTGTTGGAGGTCAGCAGCCTAGCGAGGAATCAGTAGTGAAGACAGCAAAGAAAATTAATAATCAGAAATTCAATGAAC TTTCTGGAAATGACATATTCAAAGGTGATGCTCCTCCATCATCTGCGGAGAAACCTCTGAGTGTGGCAAAATTGCGAGAGATGAGCGGCAATGATATATT TGCTGATGGGAAGGTAGAGTCTCGAGACTTCCTAGGTGGCGTACGCAAGCCCCCTGGCGGCGAGAGCAGCATTGCCCTGGTTTAA
AA sequence Show only first row Show all	>Potri.005G165500.1 pacid=42802313 polypeptide=Potri.005G165500.1.p locus=Potri.005G165500 ID=Potri.005G165500.1.v4.1 annot-version=v4.1 MERSTPVRKPHTSTADLLTWSETPPPDSPSVGSAPRPTRSHQPSDGISKVVFGGQVTEEEFESLNKRKPCSGYKMKEMTGSGIFAANGEDDTAESGSANP IPNSKTGLRMYQQAIAGISHISFAEDDSVSPKKPTTLPEVAKQRELSGTLESESDAKLKKQISGAKSKELSGHDIFAPPPEILPRPTTVRALALQESIQL GEPSPHDPVGGQQPSEESVVKTAKKINNQKFNELSGNDIFKGDAPPSSAEKPLSVAKLREMSGNDIFADGKVESRDFLGGVRKPPGGESSIALV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35780			unknown protein		Potri.005G165500 [exp]	0	1
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	3.00	0.9145
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.018G096077 [exp]	3.87	0.9105
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	5.29	0.9060
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.014G066800 [exp]	5.47	0.9155	GOS12.1
AT4G29340		PRF4	profilin 4 (.1)		Potri.006G235200 [exp]	7.41	0.9157	Pt-PRO1.4
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	8.24	0.9110
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	10.00	0.8998
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	13.85	0.9023	SYP131.2
AT2G17990			unknown protein		Potri.005G115500 [exp]	14.07	0.8995
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.001G366800 [exp]	14.21	0.8520

Compare expression of checked genes

Potri.005G165500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.