Plant FIBer expression Database

Potri.005G165700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78140 407 / 2e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT2G41040 271 / 4e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT5G13710 43 / 0.0002 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
AT1G23360 41 / 0.0008 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G095100
[exp]
580 / 0 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.018G120000
[exp]
298 / 8e-100 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.006G060400
[exp]
291 / 4e-97 AT2G41040 461 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.016G056000
[exp]
49 / 3e-06 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Potri.008G188600
[exp]
45 / 5e-05 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008815
[exp]
287 / 2e-95 AT2G41040 451 / 9e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10029124
[exp]
45 / 4e-05 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10013038
[exp]
45 / 4e-05 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Lus10019750
[exp]
42 / 0.0004 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10023995
[exp]
42 / 0.0004 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
Representative CDS sequence
>Potri.005G165700.2 pacid=42803960 polypeptide=Potri.005G165700.2.p locus=Potri.005G165700 ID=Potri.005G165700.2.v4.1 annot-version=v4.1
ATGGCCTCCTCAATTATTCTCTCGTCCTCGTTTCTCCCGAGTCAACTCAGCAACTCGAGTCGAGTTCATTTCAAACGGTACTGTACCCCGACCTTTAAAC
GCACTAGTTTCGCGACAAAAATTCGCGCTTCTTCCACCGCCTTTGCCGAGACCAAGCCAACGGGTCCCGTGACAGTAGAAAAGGATGTCCGTAGCAGCAA
GAACATCCTAGCCTGTCCCGTATGTTACGAGCCCGTGACTTTGATTGGCGCAACCGTCCTATCTGTATATTCTGCACGTGGATCTAGTTTGCAGTGCAGC
ACTTTAAACATTCAGTCGGAGATGGTCTGCAACAAGGAAACACATCTTGAATTGACGGTAGCTAGTGGGTCTAAGGGATATGGTGATATTGCTATGCCTT
TGGCCACAGAATTTTTCAGAACTCCATTCATGTCATTCCTTTACGAGAGAGGTTGGCGTCAAAATTTTGTATGGGGTGGTTTTCCAGGCCCAGAGAAAGA
GTTTGAATTGATGAAGGATTATCTCAAGCCAGTTTTAGGTGGCAATATTCTAGATGCTAGTTGTGGTAGTGGTTTATTTTCAAGACTATTCACCAAGAGT
GGGTTGTTTTCTCTTGTCATGGCTCTGGACTACTCAGAAAACATGCTGCAACAGTGCTATGAATTCATCAAGCAGGAGGAGAACTTTCCAAAAGAGAACT
TAATATTGGTCAGAGCTGACATAGCTAGACTTCCTTTCATTTCTGGTTCTCTTGATGCTGTCCCTGCTGGTGCTGCTATACACTGTTGGCCTTCACCATC
TGTGGCTGTAGCTGAAGTAAGTCGAGTTTTGAGGCCTGGAGGAGTGTTCGTTGCCACCACCTACATACTTGATGGGCATTTCAGTCTCATCCCATTTTTG
AAGCCTATAAGCCAGAGATTCACACAAGTATCAGGCAGCAACATCTTCCTATCTGAACGTGAACTAGAAGACGTCTGTAGAGCCTGTGGACTAGTTGATT
TTACATGTACAAGAAATGGGCGGTTTGTGATGTTTTCTGCAACAAAACCACGCTAA
AA sequence
>Potri.005G165700.2 pacid=42803960 polypeptide=Potri.005G165700.2.p locus=Potri.005G165700 ID=Potri.005G165700.2.v4.1 annot-version=v4.1
MASSIILSSSFLPSQLSNSSRVHFKRYCTPTFKRTSFATKIRASSTAFAETKPTGPVTVEKDVRSSKNILACPVCYEPVTLIGATVLSVYSARGSSLQCS
TLNIQSEMVCNKETHLELTVASGSKGYGDIAMPLATEFFRTPFMSFLYERGWRQNFVWGGFPGPEKEFELMKDYLKPVLGGNILDASCGSGLFSRLFTKS
GLFSLVMALDYSENMLQQCYEFIKQEENFPKENLILVRADIARLPFISGSLDAVPAGAAIHCWPSPSVAVAEVSRVLRPGGVFVATTYILDGHFSLIPFL
KPISQRFTQVSGSNIFLSERELEDVCRACGLVDFTCTRNGRFVMFSATKPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78140 S-adenosyl-L-methionine-depend... Potri.005G165700
[exp]
0 1
AT5G05800 unknown protein Potri.005G153700
[exp]
20.34 0.7727
AT5G40990 GLIP1 GDSL lipase 1 (.1) Potri.017G136601
[exp]
43.35 0.7408
AT5G64440 ATFAAH fatty acid amide hydrolase (.1... Potri.001G285900
[exp]
45.82 0.6866
AT3G25930 Adenine nucleotide alpha hydro... Potri.010G123300
[exp]
70.00 0.6899
AT1G45616 AtRLP6 receptor like protein 6 (.1) Potri.016G120532
[exp]
75.23 0.6768
Potri.002G214475
[exp]
90.89 0.7109
AT5G17020 HIT2, ATXPO1, A... HEAT-INTOLERANT 2, ARABIDOPSIS... Potri.013G088600
[exp]
91.50 0.6987 XPO1.2
AT5G60230 ATSEN2, SEN2 splicing endonuclease 2 (.1.2) Potri.014G083401
[exp]
96.24 0.6659
AT3G01930 Major facilitator superfamily ... Potri.017G064201
[exp]
107.33 0.7067
AT1G21360 GLTP2 glycolipid transfer protein 2 ... Potri.002G071100
[exp]
111.75 0.6616

Potri.005G165700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.