Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22220 295 / 1e-99 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1) AT1G78100 288 / 1e-96 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1) AT4G18380 177 / 2e-52 F-box family protein (.1.2) AT1G30200 174 / 2e-51 F-box family protein (.1.2) AT5G46170 173 / 5e-51 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094600 [exp] 538 / 0 AT1G78100 292 / 9e-98 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.011G082900 [exp] 209 / 1e-64 AT5G46170 488 / 9e-173 F-box family protein (.1) Potri.004G065900 [exp] 170 / 1e-49 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.009G047600 [exp] 146 / 3e-41 AT4G18380 197 / 4e-60 F-box family protein (.1.2) Potri.019G023500 [exp] 48 / 4e-06 ND / Potri.001G022400 [exp] 46 / 2e-05 ND / Potri.003G203000 [exp] 45 / 4e-05 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G021801 [exp] 45 / 5e-05 ND / Potri.001G021900 [exp] 44 / 5e-05 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036451 [exp] 278 / 6e-93 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10041123 [exp] 274 / 4e-91 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10038511 [exp] 165 / 7e-49 AT5G46170 453 / 5e-161 F-box family protein (.1) Lus10023298 [exp] 148 / 3e-41 AT5G46170 505 / 4e-179 F-box family protein (.1) Lus10013431 [exp] 74 / 3e-15 AT4G18380 102 / 4e-25 F-box family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.005G166500.1 pacid=42802579 polypeptide=Potri.005G166500.1.p locus=Potri.005G166500 ID=Potri.005G166500.1.v4.1 annot-version=v4.1 ATGATCGAAGCAATGGACGGCTTTGATCGGCTCCCGGACTCCTTAATCCTCCTCATCTTCAACTCTATCTCCGACATCAAGGCACTAATCCGTTGCCGTT CCGTTTCGAAACGTTTCAACTCACTAGTCCCCCAAACCGAATCCCTCTCTCTCAAAGTCGACTGCGTCATCTCACCTGAGTCGGACTCCGACTCGCTCTT CACTCTCTTCAAATCTCTCCTGAAATCCATCCACGATCTCTTCAAACCCGACCCCAAACCCACGGCCCGAAACCAAACCCAGAACTCCCCGGCCCGAATC CTCTCCCAGTTCGACCGGATCCGTGACCTCCAAATCGAACTGCCAGCTGGCGACTTGAAATTAGAGAAAGGAGCCGTTATCAAATGGAGAGCTGAATTCG GCAAGTCGTTAAAAAGCTGCGTTATTCTAGGGTTTCGCCGCGTAGCAAATCCCGAGGGAAATAGTGCTGACGAGGAAATTGATTTTACGGGAGGGTTAAA AACAAGAGTTGTGTGGGCAATAAGTGCGTTGATTGCAGCATCGGCGAGGCATTATCTGTTAAACGACGTCGTCAAGGGGCATAGGGAGATGGAGAGGTTG GTGTTGGTGGACAGAGAAGGGGAAGGGACGGTGGCGATGGAGAAGGAAGGGTTGAGGGAGTGTAGGGAGGCGGCGCGTGGAGGAGAGTGGGAGGAGGACG GGGGGAGGACGGTAGTGCCGAGTGTGAGGATGAGGATGAGGCACGAGCAAAGAGTGCAGTTGAAGGATGGAGTTTGGATGGAAGGTGTGACGTTGGTGGT GGTCAGGCCTTGTAGCGGCGGAGGGGATGGGGAGGATGCTGAGTTGGCATTAGGTGCGTTCGGTGGTGGGATTTACGGAGAAGCTGTACAGGTACTCCTT AAGAATAAGAGTTATTTATTGGAAATGAATTCCTTCTAA
AA sequence Show only first row Show all	>Potri.005G166500.1 pacid=42802579 polypeptide=Potri.005G166500.1.p locus=Potri.005G166500 ID=Potri.005G166500.1.v4.1 annot-version=v4.1 MIEAMDGFDRLPDSLILLIFNSISDIKALIRCRSVSKRFNSLVPQTESLSLKVDCVISPESDSDSLFTLFKSLLKSIHDLFKPDPKPTARNQTQNSPARI LSQFDRIRDLQIELPAGDLKLEKGAVIKWRAEFGKSLKSCVILGFRRVANPEGNSADEEIDFTGGLKTRVVWAISALIAASARHYLLNDVVKGHREMERL VLVDREGEGTVAMEKEGLRECREAARGGEWEEDGGRTVVPSVRMRMRHEQRVQLKDGVWMEGVTLVVVRPCSGGGDGEDAELALGAFGGGIYGEAVQVLL KNKSYLLEMNSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.005G166500 [exp]	0	1
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.014G089600 [exp]	1.73	0.8307
AT3G57120			Protein kinase superfamily pro...		Potri.008G037501 [exp]	2.82	0.8068
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.001G156000 [exp]	16.88	0.7819
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014322 [exp]	17.23	0.7739
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	37.78	0.7463
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.003G129300 [exp]	40.41	0.7372
AT4G32020			unknown protein		Potri.006G260000 [exp]	42.42	0.7346
					Potri.019G025866 [exp]	43.12	0.7770
AT4G17080			Histone H3 K4-specific methylt...		Potri.014G052300 [exp]	45.27	0.7135
					Potri.012G114166 [exp]	46.64	0.7796

Compare expression of checked genes

Potri.005G166500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.