Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65140 361 / 2e-125 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G78090 337 / 2e-115 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT5G10100 332 / 6e-114 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT1G35910 333 / 7e-114 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G22210 318 / 2e-108 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G22190 318 / 3e-108 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39770 310 / 3e-105 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 266 / 1e-87 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G22590 258 / 3e-84 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G12430 244 / 5e-79 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094500 [exp] 534 / 0 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.007G090900 [exp] 395 / 3e-138 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 392 / 3e-137 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G126100 [exp] 275 / 1e-90 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 273 / 6e-90 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 268 / 2e-88 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 266 / 3e-87 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G020300 [exp] 250 / 2e-81 AT1G78090 333 / 4e-113 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Potri.012G001000 [exp] 243 / 7e-79 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019666 [exp] 326 / 2e-111 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10000687 [exp] 281 / 1e-93 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10024607 [exp] 280 / 8e-93 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032244 [exp] 277 / 1e-91 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031146 [exp] 268 / 4e-88 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031723 [exp] 267 / 4e-88 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10027208 [exp] 265 / 7e-87 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 259 / 4e-84 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10019010 [exp] 223 / 6e-71 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 221 / 2e-70 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.005G166700.1 pacid=42803924 polypeptide=Potri.005G166700.1.p locus=Potri.005G166700 ID=Potri.005G166700.1.v4.1 annot-version=v4.1 ATGACAAACCAGAATGTGGTTGTGCCTAATGCCAGAAAAGGTGTTGATATCACCATCACAATGGCCCTGTCCAAGTCTCTGTTTTCACCTGTTGTGCCGA AGCCATTGCCAGCTGCTCCTGGTGGGTATTTCACAATATCCCGGAAGATGTTCGCAAAGAAGACTGAAACTGGAGGCAAAACCAATTCCTGGGCTGATTC TATGAGAGATTCTTCACCTACCCGTGTCAAATCCACTACGTCTTTATCAGAAATCGAGGAGAAAAATACTTGGATTGTAAATCATCCTTCTGCTTTGAAC ATGTTCGAGCAAATAGTGAATGGCTCAAAGGGAAAACAGATTGTAATGTTTTTAGATTATGATGGTACACTGTCACCCATTGTTGAAGATCCTGACAGGG CATTCATGACCAACGAGATGAGAGAAGCTGTTAGGGACGTCGCTAGATACTTTCCCACTGCTATAGTGACGGGAAGGTGTAGGGATAAGGTGTACAGCTT CGTAAGATTGGCAGGGCTTTATTACGCTGGTAGCCATGGCATGGACATCAAGGGACCATCCAAGAATTGTTGCATAAACAAAAAAGATTATCAAGGTGTA CTTTTTCAACCTGCCAGTGATTTTTTACCCATGATTGATGAGGTGTACAATGCTTTGCTGGAGAGAACAAAGTATATCCCAGGGGCTAGAGTAGAAGACA ACAAATTTTGCATATCCGTACACTTTCGTTGTGTCGAGGAAAAGATGTGGGCTGCATTAGTAGAGCAAGTAAGATCAGTTCTCAATGGTTATCCAAAACT TAGATTAACTCAAGGGAGGAAGGTTTTAGAGATCCGACCCACCATTAAATGGGACAAGGCAAAGCTCTTGAGTTCTTGTTGGAATCATTAG
AA sequence Show only first row Show all	>Potri.005G166700.1 pacid=42803924 polypeptide=Potri.005G166700.1.p locus=Potri.005G166700 ID=Potri.005G166700.1.v4.1 annot-version=v4.1 MTNQNVVVPNARKGVDITITMALSKSLFSPVVPKPLPAAPGGYFTISRKMFAKKTETGGKTNSWADSMRDSSPTRVKSTTSLSEIEEKNTWIVNHPSALN MFEQIVNGSKGKQIVMFLDYDGTLSPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVYSFVRLAGLYYAGSHGMDIKGPSKNCCINKKDYQGV LFQPASDFLPMIDEVYNALLERTKYIPGARVEDNKFCISVHFRCVEEKMWAALVEQVRSVLNGYPKLRLTQGRKVLEIRPTIKWDKAKLLSSCWNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Potri.005G166700 [exp]	0	1
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.005G251000 [exp]	3.87	0.7410
AT5G50360			unknown protein		Potri.015G091900 [exp]	16.73	0.6863
AT4G23050			PAS domain-containing protein ...		Potri.003G122700 [exp]	24.37	0.7318
AT4G36850			PQ-loop repeat family protein ...		Potri.007G031800 [exp]	37.34	0.6616
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.016G046500 [exp]	48.67	0.6562
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Potri.003G147900 [exp]	51.30	0.6512
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Potri.014G066300 [exp]	61.02	0.6331	PtrEXPB1,Pt-EXPB4.1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	66.81	0.6454	MYB.53
AT2G28690			Protein of unknown function (D...		Potri.001G235200 [exp]	89.33	0.6239
AT5G05340			Peroxidase superfamily protein...		Potri.013G083600 [exp]	108.66	0.6129

Compare expression of checked genes

Potri.005G166700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.