Plant FIBer expression Database

Potri.005G167200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G22140 60 / 7e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025627
[exp]
69 / 4e-17 AT1G22140 81 / 4e-22 unknown protein
Lus10028077
[exp]
56 / 9e-12 AT1G22140 67 / 3e-16 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G167200.1 pacid=42805651 polypeptide=Potri.005G167200.1.p locus=Potri.005G167200 ID=Potri.005G167200.1.v4.1 annot-version=v4.1
ATGGGCGGCGCAGAAGAAGAGAAGCAAGCAAACGAGATGCCAAGGTCTAATTCAATAACACAGGCCCAGTTCCTCCTCTGGAAACGCCAAAAGGAAGCAG
ATTCCTCAGCTAGAAAAGCTGAAGCTGCTAGGAAACGTGAAGAAGATATAGCTGCAGGAACAGTACAAATGAATGGCCGGGAACTCTTCTTGCACGAACC
TTGGGTGTTTGATAACACCCAGTATTGA
AA sequence
>Potri.005G167200.1 pacid=42805651 polypeptide=Potri.005G167200.1.p locus=Potri.005G167200 ID=Potri.005G167200.1.v4.1 annot-version=v4.1
MGGAEEEKQANEMPRSNSITQAQFLLWKRQKEADSSARKAEAARKREEDIAAGTVQMNGRELFLHEPWVFDNTQY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G22140 unknown protein Potri.005G167200
[exp]
0 1
AT3G18165 MOS4 modifier of snc1,4 (.1) Potri.015G041800
[exp]
7.74 0.7816
AT5G59910 HTB4 Histone superfamily protein (.... Potri.008G030400
[exp]
9.05 0.7875
AT4G21110 G10 family protein (.1) Potri.009G147000
[exp]
16.06 0.7658
AT5G55140 ribosomal protein L30 family p... Potri.002G225600
[exp]
16.43 0.7710
AT1G49880 EMB3106, AtErv1... EMBRYO DEFECTIVE 3106, Erv1/Al... Potri.009G090200
[exp]
27.56 0.7778
AT1G51730 Ubiquitin-conjugating enzyme f... Potri.001G199500
[exp]
28.56 0.6933
AT5G46030 unknown protein Potri.011G097300
[exp]
30.04 0.7614
AT5G41685 Mitochondrial outer membrane t... Potri.006G077500
[exp]
30.39 0.7100 Pt-TOM7.2
AT5G49410 unknown protein Potri.005G118900
[exp]
31.36 0.7192
AT5G64650 Ribosomal protein L17 family p... Potri.007G107100
[exp]
32.74 0.7534

Potri.005G167200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.