Plant FIBer expression Database

Potri.005G167800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G089400
[exp]
649 / 0 ND /
Potri.005G078500
[exp]
614 / 0 ND /
Potri.007G010000
[exp]
498 / 4e-173 ND /
Potri.002G093000
[exp]
394 / 3e-136 ND /
Potri.010G049800
[exp]
44 / 0.0002 AT1G13130 544 / 0.0 Cellulase (glycosyl hydrolase family 5) protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041110
[exp]
753 / 0 ND /
Lus10036436
[exp]
712 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.005G167800.1 pacid=42803106 polypeptide=Potri.005G167800.1.p locus=Potri.005G167800 ID=Potri.005G167800.1.v4.1 annot-version=v4.1
ATGGCGGCGATGTATTCAACAAGACAGCTGCTGGCCGTGTGTGTCGTAGCTTTATCATTCTATCTTTCACATGGAAGAGTAAATCCCAGCTTTAAAATTA
ATGCAGTTAATCTTGGTGGTTGGCTTGTTACTGAAGGATGGATTAAACCTTCTCTTTTTGATGGCATCACCAACAAAGACTTCTTGGACGGAACCGGGCT
GCAGTTTAAATCAGTCACAGTTGGGAAGTATCTTTGCGCCGAGGCAGGAGGAGGAAACATTATTGTTGCAAACCGAACTTCTGCCTCAGGCTGGGAAACG
TTTAGTCTGTGGAGGATCAACGAAACCAATTTCAACTTCAGGGTCTTTAACAAACAATTCGCGGGTTTGGATACCAATGGCAATGGGATTGACATAGTAG
CTGTTTCTAGCACACCTGGAAGATCAGAAACTTTTGAGATTGTGAGAAACTCTAATGACACAAGTCGTGTTAGAATCAAAGCATCCAATGGATTCTTCTT
GCAGGCGAAAACAGAGGAGCTGGTGACAGCTGATTATGCAGGTGACAACAAATGGGGAGATGATGACCCATCAGTATTTGTGATGACCATTGCTGGAAGG
TTGCAAGGAGAGTTTCAAGTCACTAATGGTTATGGTCCCAAATTAGCCCCGAAAGTTATGAGGGATCACTGGAGGACATTCATTGTTGAAGATGACTTCA
AGTTCATATCTCAAAACGGAATAAATGCTGTGAGAATACCAGTTGGATGGTGGATAGCAAGTGATCCCACGCCTCCACAACCTTATGTAGGCGGGTCTTT
GAAAGCATTAGACAATGCCTTCTTATGGGCACAGAATTATGGGTTGCAGGTTGTAATTGACCTGCATGCAGCCCCTGGCTCCCAAAATGGCTGGGAACAT
AGCTCTTCTAGAGATGGCTCTCAAGAATGGGGCCAAACAGATGAAAATATACGACAAACAGTTGATGTTATAGACTTCTTAACTGCCAGGTATGCCAAGA
GCCCAAGCCTTTATGCAGTTGAACTCATGAACGAGCCTCGGGCACCAGGAGCATCTCTAGACAGCATGACCAAATACTACAAGGGCGGTTACGACGCTGT
CCGCAAGCATTCCTCAACAGCTTATGTGGTGATGTCAAATAGGCTGAGCTCAGATGATCCAAGAGAGTTCTTTCCTCTTGCCAGTGGCTTAACCGGATCT
GTTATTGACGTCCATTATTACAATCTCTTCTCTGATGAATTTAACAGCATGAGTGTTCAACAGAACATTGATTTCATAAACACAAACAGGTCGGCCCAAC
TGAATTACGTGACCACATCAAACGGTCCTCTTACTTTTGTCGGAGAATGGGTGGCAGAGTGGACAGTTCAAGGGGCAACGAAGGAGGATTACCAGAGATT
TGCAGAGGCCCAGTTGAAGGTCTTTGGGAGAGCTACTTTTGGGTGGGCCTATTGGACTCTAAAGAATGTAAACAATCATTGGAGCCTGGAGTGGATGATC
AAGAATGGCTACATCAAGATATAG
AA sequence
>Potri.005G167800.1 pacid=42803106 polypeptide=Potri.005G167800.1.p locus=Potri.005G167800 ID=Potri.005G167800.1.v4.1 annot-version=v4.1
MAAMYSTRQLLAVCVVALSFYLSHGRVNPSFKINAVNLGGWLVTEGWIKPSLFDGITNKDFLDGTGLQFKSVTVGKYLCAEAGGGNIIVANRTSASGWET
FSLWRINETNFNFRVFNKQFAGLDTNGNGIDIVAVSSTPGRSETFEIVRNSNDTSRVRIKASNGFFLQAKTEELVTADYAGDNKWGDDDPSVFVMTIAGR
LQGEFQVTNGYGPKLAPKVMRDHWRTFIVEDDFKFISQNGINAVRIPVGWWIASDPTPPQPYVGGSLKALDNAFLWAQNYGLQVVIDLHAAPGSQNGWEH
SSSRDGSQEWGQTDENIRQTVDVIDFLTARYAKSPSLYAVELMNEPRAPGASLDSMTKYYKGGYDAVRKHSSTAYVVMSNRLSSDDPREFFPLASGLTGS
VIDVHYYNLFSDEFNSMSVQQNIDFINTNRSAQLNYVTTSNGPLTFVGEWVAEWTVQGATKEDYQRFAEAQLKVFGRATFGWAYWTLKNVNNHWSLEWMI
KNGYIKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G167800
[exp]
0 1
AT3G47570 Leucine-rich repeat protein ki... Potri.004G069001
[exp]
1.73 0.8453
AT5G46600 Aluminium activated malate tra... Potri.002G054300
[exp]
3.46 0.7962
AT4G39950 CYP79B2 "cytochrome P450, family 79, s... Potri.004G055200
[exp]
8.77 0.7463 Pt-CYP79.1
AT5G24090 ATCHIA chitinase A (.1) Potri.014G092932
[exp]
11.61 0.7853
AT2G31335 unknown protein Potri.019G012400
[exp]
13.85 0.7955
AT5G25820 Exostosin family protein (.1) Potri.006G239000
[exp]
15.58 0.7547
AT5G20260 Exostosin family protein (.1) Potri.018G125058
[exp]
15.87 0.6720
AT5G22860 Serine carboxypeptidase S28 fa... Potri.001G213300
[exp]
15.96 0.7166
AT5G13690 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCL... Potri.009G058100
[exp]
16.79 0.6598
AT3G60130 BGLU16 beta glucosidase 16 (.1.2.3) Potri.001G226200
[exp]
17.66 0.7657 Pt-PLIN-GEN.19

Potri.005G167800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.