Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22170 489 / 3e-175 Phosphoglycerate mutase family protein (.1) AT1G78050 460 / 1e-163 PGM phosphoglycerate/bisphosphoglycerate mutase (.1) AT3G50520 58 / 1e-09 Phosphoglycerate mutase family protein (.1) AT5G04120 58 / 2e-09 Phosphoglycerate mutase family protein (.1) AT5G22620 45 / 4e-05 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093300 [exp] 672 / 0 AT1G22170 495 / 2e-177 Phosphoglycerate mutase family protein (.1) Potri.005G078100 [exp] 494 / 9e-177 AT1G22170 451 / 7e-160 Phosphoglycerate mutase family protein (.1) Potri.007G040700 [exp] 61 / 3e-10 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1) Potri.004G187700 [exp] 47 / 1e-05 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.011G052200 [exp] 42 / 0.0005 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033465 [exp] 533 / 0 AT1G22170 478 / 8e-171 Phosphoglycerate mutase family protein (.1) Lus10020910 [exp] 530 / 0 AT1G22170 476 / 3e-170 Phosphoglycerate mutase family protein (.1) Lus10014360 [exp] 53 / 1e-07 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 52 / 2e-07 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.005G168000.1 pacid=42804097 polypeptide=Potri.005G168000.1.p locus=Potri.005G168000 ID=Potri.005G168000.1.v4.1 annot-version=v4.1 ATGGCCACTGCTGTGTTTCACCAAGCCTTAGGGACCGCTCAGTCCCATCAACACCTCCAGAACTCCGGTTCTCGTCTTGAGTTTGGCCATGCTTCGTTGA AACTGATATCTAAAGGTTTTAAGGTTGACATTGGACTGTCAAGAAGAGGGAGTTATAGTTCTTGGAAGAAGAAATTTGGTCTTATTCAAGCCTCGGCTTC TCAAACTTCAGTGGTTCAACCGGTTTCATATCCCCCAAATAACAGCTCTGATGAGTTACGAAAGAAATCAAGTGAAGCAGCTTTGATACTGATTAGGCAT GGTGAGTCACTATGGAATGAAAAGAACCTCTTCACAGGCTGTGTTGATGTGCCATTGACAAAGAAGGGTGTGGAGGAGGCAATTGAAGCTGGTAAGAGAA TCAGCAACATACCCGTCGACATGATATATACATCAGCCTTGATACGTGCGCAGATGACTGCCATGCTTGCCATGACTCAGCATCGTCGCAAAAAGGTTCC TATCATTTTACACAATGAGAATGAACAGGCAAGGGAATGGAGTCAAATTTTTAGTGAAGATACAAAAAAGCAATCCATCCCAGTTGTAACAGCTTCGCAA TTAAATGAAAGAATGTATGGTGAATTGCAGGGTCTCAATAAGCAGGAAACAGCAGATAGGTTTGGAAAGGAAAAGGTGCACGAATGGCGGAGGAGTTATG ACATACCTCCACCCAATGGCGAGAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCGTATTTCAAAGATCACATTGAACCTCAACTTCTATCTGGGAAGAA TGTGATGATTGCTGCCCATGGGAATTCACTGAGGTCCATCATCATGTACCTTGACAAATTAACTTCACAGGAGGTTATCAACTTAGAATTATCAACTGGA ATACCAATGCTTTACATATTAAAAGGGGGGAAATTCATTAGGAGGGGAAGTCCTGCAGGACCAACTGAGGCTGGCGTGTATGCATATACTAGGAGTTTAG CTCTATATAGGCAGAAATTAGATGATATGCTGCGTTAA
AA sequence Show only first row Show all	>Potri.005G168000.1 pacid=42804097 polypeptide=Potri.005G168000.1.p locus=Potri.005G168000 ID=Potri.005G168000.1.v4.1 annot-version=v4.1 MATAVFHQALGTAQSHQHLQNSGSRLEFGHASLKLISKGFKVDIGLSRRGSYSSWKKKFGLIQASASQTSVVQPVSYPPNNSSDELRKKSSEAALILIRH GESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRKKVPIILHNENEQAREWSQIFSEDTKKQSIPVVTASQ LNERMYGELQGLNKQETADRFGKEKVHEWRRSYDIPPPNGESLEMCAERAVAYFKDHIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVINLELSTG IPMLYILKGGKFIRRGSPAGPTEAGVYAYTRSLALYRQKLDDMLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22170			Phosphoglycerate mutase family...		Potri.005G168000 [exp]	0	1
					Potri.003G124000 [exp]	8.83	0.8598
AT3G03530		NPC4	non-specific phospholipase C4 ...		Potri.013G073600 [exp]	9.64	0.8922
AT3G46660		UGT76E12	UDP-glucosyl transferase 76E12...		Potri.009G038950 [exp]	19.41	0.8663
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.010G200100 [exp]	21.35	0.8728
					Potri.018G118900 [exp]	21.77	0.8773
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	24.37	0.8057
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	32.55	0.8748
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	33.46	0.8766	RAP21
AT5G66420			unknown protein		Potri.005G120100 [exp]	37.97	0.8715
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.010G122400 [exp]	38.88	0.8630

Compare expression of checked genes

Potri.005G168000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.