Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08690 134 / 5e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 133 / 1e-37 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75170 102 / 4e-26 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 94 / 9e-23 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G63060 44 / 5e-05 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G51670 44 / 8e-05 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 41 / 0.0005 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72150 41 / 0.0006 PATL1 PATELLIN 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093400 [exp] 172 / 8e-52 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 128 / 3e-35 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 107 / 6e-28 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 105 / 8e-27 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 102 / 5e-26 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 99 / 1e-24 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G080100 [exp] 43 / 8e-05 AT5G63060 318 / 3e-110 Sec14p-like phosphatidylinositol transfer family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023956 [exp] 162 / 1e-49 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10020911 [exp] 142 / 2e-40 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 139 / 1e-39 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10014312 [exp] 111 / 3e-29 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 110 / 5e-29 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 108 / 4e-28 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 108 / 8e-28 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 104 / 6e-27 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10023378 [exp] 41 / 0.0006 AT1G30690 247 / 1e-77 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G168100.3 pacid=42804128 polypeptide=Potri.005G168100.3.p locus=Potri.005G168100 ID=Potri.005G168100.3.v4.1 annot-version=v4.1 ATGAGTGAGGGTGGAAAGAGATCCTCTTCAAATGGCTTTGAGAAGCCTTTGACAACTGAAGATCAGCAAGCATGGGTTAATGGCGTGAGAAGGCTGGTGG GGCCACTGCCAGATAAGATAAGATGTCCATTTATTGTCCTGATGCATCAATTGCAAGGATATCTGAGGGCACGGAACTGGAACGTCAAGAAGGCACTGAA AATGCTGAAAGAAACCTTAAAATGGAGAGCAGCACACAAACCAGAAGAGATTCGCTGGGAAGAGGTTGCTCATGAAGCACAAACGGGGAAAATCTACAGA TCAAATTACTTTGACAAGCATGGAAGAACAGTTCTTGCCATGAGACCTAGTTGCCAGGTGGCAAAAGCATTTCTAGAGCCTAAGACTTACAATAAAGTCA AGTTTGTTTACGCTGAAGAAATCAATACTATGAAAATAATGGAAGATCTATTTGATATGGACCATCTCGAAGCTGCATTTGGTGGAAAAGGTGTCGATTT TGATATAAGCGAGTATGCAGAGAGGATGACGGAGGACGACAAGAGGATGCCTTCATTTTGGACAAGAGTGAGTTTCTCCCCGGCAGCTCCACAACCGGAC ATGGCATGTACTACTTTGGACTCGCTTAACTTGGACTCAGATTCTGATGCTTCTGACAATACTCTAGTGATGGAATCGATTCAGAAACTGTTACCACTGT TGAAAATACTCTAG
AA sequence Show only first row Show all	>Potri.005G168100.3 pacid=42804128 polypeptide=Potri.005G168100.3.p locus=Potri.005G168100 ID=Potri.005G168100.3.v4.1 annot-version=v4.1 MSEGGKRSSSNGFEKPLTTEDQQAWVNGVRRLVGPLPDKIRCPFIVLMHQLQGYLRARNWNVKKALKMLKETLKWRAAHKPEEIRWEEVAHEAQTGKIYR SNYFDKHGRTVLAMRPSCQVAKAFLEPKTYNKVKFVYAEEINTMKIMEDLFDMDHLEAAFGGKGVDFDISEYAERMTEDDKRMPSFWTRVSFSPAAPQPD MACTTLDSLNLDSDSDASDNTLVMESIQKLLPLLKIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	0	1
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	5.47	0.6869
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G245500 [exp]	7.14	0.5147
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	8.48	0.7209
AT5G16330			NC domain-containing protein-r...		Potri.005G056300 [exp]	9.48	0.7069
					Potri.002G118950 [exp]	12.48	0.6351
AT2G36570			Leucine-rich repeat protein ki...		Potri.003G020600 [exp]	15.49	0.5811
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	16.52	0.6247
AT1G10740			alpha/beta-Hydrolases superfam...		Potri.016G114350 [exp]	19.44	0.5279
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Potri.001G370600 [exp]	22.36	0.6034
AT3G60650			unknown protein		Potri.002G144400 [exp]	22.80	0.5445

Compare expression of checked genes

Potri.005G168100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.