Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30100 1619 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 1446 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 318 / 3e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 268 / 3e-75 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 182 / 2e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52090 176 / 2e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 173 / 5e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 171 / 6e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 167 / 6e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 165 / 7e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093500 [exp] 2382 / 0 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 301 / 7e-83 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 258 / 8e-72 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143000 [exp] 189 / 4e-48 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077600 [exp] 187 / 7e-48 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 188 / 8e-48 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077500 [exp] 187 / 8e-48 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 188 / 1e-47 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 187 / 1e-47 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033462 [exp] 1717 / 0 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020914 [exp] 1022 / 0 AT4G30100 903 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 327 / 4e-91 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 323 / 8e-90 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 247 / 3e-68 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 246 / 9e-68 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 216 / 1e-57 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035775 [exp] 201 / 1e-52 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035774 [exp] 196 / 8e-51 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035776 [exp] 197 / 2e-50 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.005G168300.2 pacid=42803438 polypeptide=Potri.005G168300.2.p locus=Potri.005G168300 ID=Potri.005G168300.2.v4.1 annot-version=v4.1 ATGGGTTCCCGAGGAAGGCCAGTATTTGATCTTAATGAACCCCCAACTGAGGATGATGAGATTGATCATGCTGTATGCCTGCAGCCACACAAGGCACTTC CTTCTGCAAATTCCCACCCTTCTGACATGTTTGTAGCATCAATGGGTCCCCAAGGAATAAAAAACAACCATGCCTTTTCACACGCATCATCTATATCCGG TTTTCAGCCTTTTATTCGACCCAGGGTTGCTTTTTGCCCTGAAGTGGGTTTTGAACAGAAGATGGCTGGGGAGCAGAATCCCAAGTTAGCATCACCATCA AAAAGAATTACTGATGATGATAAGAAAGAAGCACAATCTCTAGCTTCTGGTTCTGGATCTGGTTCTGCAGAAATTAAAGTTGTGGAAAGAGAGGAAGGTG AGTGGTCTGACGCAGAGGGCACTGCTAATGTGTGTGCTGGCAATAGTATGCATGAAAAGGGCAAAGCTTCTCAATTTCAAGGAATGTCTGAAGTAGAAGG TACTTCTGTTATGGTTTCCATGAATGTTTCTAGCAGTGTTAAGGTTATTGATAACACTAAGGCTGAAAGCTGTGACCGTGTTTCACCTGGTCTGGATCAA GGTCAGAATGATTATAAAAATAATGGTAGTCGAAATTCAAATGGAAATGCTAATGATGATGTGTGTATGGATGGTCAGGAAGAAATTGCCTCACTCTCAA AACAACGTGAAGTTAGAGGTATTGAAGCAAGTCATGCTCTTAAGTTTTCAACTAATCCGGGGAAGAGGAAGATAGACCAACACAAAGAAGCAATGCTGGG TAAAAAGCGTAATAGGCAGACCATGTTGATTAATATAGATGAAGTCAAGCAAGCTGGAATTATGAAAAGTTCAACACCAAGAAGGCAGCCAAACGTCACG CGTACTGTGAAGGAGGTTCGTACTGTTCCTCAACCTGCTGAACGTTCTGGAGAAAGGCCTGGTCATCCTTTAAAGGATCAGAAACAAGCTGATCTGCCAT GTAATGATGGTGGCTTTTCTGTGGAGTCTTGTCCACCCAAATCTGAAAGTAATGGTGATATAAATTCTGCACAGCCAGCTAAGAATAGGAAAGTGAATGG TGACTCTGATTTTTCTGTAGACACACACCTGCCACCTATTCAGAAACAGAGTACATGGAAACAGCCTGCTGAGAGTTCGTGGAAGCATCCAGCTGATTTA AGACAGCCAAAAAACTCACAATTCTCTAACAGGAAGCCTGCTCTTATCAACCAAGGTTCCATGGATTCAAAGTTGGGAAACAAGAAATACCTTCCTGTGA AAAAGTCGACTGTAGCCAGTACACCCTATCAGGACACATCAGTGGAACGTCTTATACGGGAGGTGACTAATGAAAAATTTTGGCATCACCCAGAGGACTC TGAGCTCCAATGTGTTCCGGGTCGCTTTGAGTCTGTGGAAGAATATGTAAGAGTATTTGAGCCTCTTCTTTTTGAGGAATGCCGAGCTCAACTTTACAGC ACATGGGAGGAGTCAGCTGAAACTAATGCACACATTATGGTTCGTATAAAGAGCATTGAAAGGCGGGAAAGAGGATGGTATGATGTCATTGTTCTTCCAG CAAATGAGTGCAAGTGGACATTCAAGGAGGGTGATGTTGCAGTTCTCTCAACTCCAAGGCCTGGAACAGCAGTAAGATCCAAGAGGAACAACACCTCGTC ATCAAACGAAGATGATGAGGAGCCTGATATCAATGGACGTGTGGCTGGTACTGTTAGAAGACACATCCCTTTGGATTCTCGTGATCCTCCTGGTGCAATC CTTCATTTTTTTGTTGGGGACTCTTATGATCCTCACAGCAAGGTTGATGAGGATCATATTTTGAGGAAACTTCAACCCAGAGGCACCTGGTTTTTGACTG TCCTTGGTTCTCTTGCAACCACCCAGCGTGAGTATGTTGCGCTGCATGCATTTTGCCGTCTCAATTTACAGATGCAAGCTGCAATCCTAAAGCCCAGTTC AGATCACTTCCCAAAATATGAGCAGCAGACCCCAGCCATGCCTGAATGCTTCACACAGAATTTTGTTGACCATTTGCGGAGGACATTCAATGGGCCACAG CTGGCTGCAATCCAATGGGCTGCCACACATACTGCTGCTGGTACAAGTAGTGGGGTAACTAAGAGGCAAGAACCATGGCCCTTTACTCTTGTACAAGGGC CTCCAGGGACAGGTAAGACGCATACTGTCTGGGGAATGCTAAATGTCATCCATCTGGTTCAGTATCAGCATTACTATACTTCTTTGCTTAAGAAACTGGC ACCCCAGAGCTATAAACAAGCCAACGAAAGCAATTCTGACAATATTGCTTTGGGGTCAATTGATGAAGTTCTTCATAACATGGACCAGAATCTCTTCCGC TCCCTTTCAAAACTCTGTCCAAAGCCCAGGATGTTAGTTTGTGCTCCTTCTAATGCTGCAACTGATGAACTTCTTGCACGTGTTCTTGATCGTGGATTTA TTGATGGTGAGATGAAAGTTTACCGGCCTGATGTGGCCAGAGTTGGGGTTGATTCGCAATCACGTGCTGCTCAGGCAGTTTCTGTTGAGCGGAGAACTGA GCAACTTTTAATCAAGAGCCGTGAAGAAATTTCAAAATGGATGCAAGAATTAAAAGTACAGGAAGCTTATTTCTCAGGACAAATTGCTGATCTTCAAAAT AAGCTTAATTTTGCAGCCGTGGATGGTCGTTCCCAAGGATCTGTTGGTGTTGATCCTGATGTTCTTATGGCTAGGGACCAAAACCGAGATGCATTACTTC AGAACCTCGCGGCTGTTGTTGAAAGCAGGGATAAAGTTCTAGTTGAAATCTCTCGCCTTCTCATCTTAGAACCCAGGTTTCGTGCTGGTAGCAATTTTAA TCTGGAAGAAGCCCGAGCTAGTCTCGAGGCAAGTTTTGCCAATGAGGCTGAGATTGTGTTCACTACCGTCTCAAGCAGTGGTCGCAAGTTGTTCTCTCGT CTTACTCATGGTTTTGATATGGTAGTTATTGACGAGGCTGCTCAAGCCAGCGAAGTTGCTGTTCTTCCTCCACTTGCACTTGGTGCTGCACGGTGTGTTC TTGTTGGCGATCCTCAGCAACTTCCTGCAACAGTTATCAGCAAGGCAGCTGGAACCTTGTTATACAGTAGAAGCCTTTTCGAAAGGTTTCAGCAAGCTGG ATGCCCGACAATGTTATTATCCGTGCAATACAGGATGCATCCTCAAATCCGAGATTTCCCTTCGCGGTACTTTTACCAAGGACGTCTCACTGACAGTGAA AGTGTTGCAAATTTACCTGATGAGACATACTACAAGGACCCTTTACTTAGACCTTATCTATTCTATGATGTTACTCATGGGCGGGAGTCACATAGAGGTG GATCGGTATCTTATCAGAACATACACGAAGCACAATTCTGTCTTCAGTTGTATGAGCATCTTCAGAAATCTTTAAAATCCTTGGGCATGGGGAGAATCAC GGTTGGCATAATCACTCCATATAAGCTGCAGTTAAAATGCCTCCAACAAGAGTTTTCAGCTGTTTTAAAATCTGAAGAAGGGAAAGATATCTATATTAAT ACCGTCGATGCTTTCCAAGGTCAGGAGCGTGATGTCATTATCATGTCTTGTGTCCGGGCCTCAAATCATGGTGTTGGTTTTGTAGCTGATATCCGCCGAA TGAATGTTGCTCTTACACGCGCTAAAAGGGCTCTATGGGTCATGGGGAATGCTACTTCTCTCGTGCAATCAGATGACTGGTCTGCGTTAGTTGCTGATGC TAAAGCAAGGAATTGTTACATGAATATGGACTCCCTCCCCAAAGATTTTTTTGTTTTGAAGGGGACCCTGGGCAAAGGTTCTTCCAATGTAAGGGGTTTG AGGTTAGGTGGACCAAGACATAGATCTTTTGATATGCACATGGAATCCAGATCAGGGACACCATCAGAGGATGATGAGAATTCAGGTGCATCTGTGATTT CCAGGAATGGGAGTTTTGGTCCCTTTAAGCCACCAATGGACAATTCGTTAGATGATTTTGATCAATCTGGTGATAGATCAAGAGATGCCTGGCAATATGG TATACAGAAGAAGCAAGGTTCCTCTGCAGTTGTAGGAAAGAGAGGCTCCTAG
AA sequence Show only first row Show all	>Potri.005G168300.2 pacid=42803438 polypeptide=Potri.005G168300.2.p locus=Potri.005G168300 ID=Potri.005G168300.2.v4.1 annot-version=v4.1 MGSRGRPVFDLNEPPTEDDEIDHAVCLQPHKALPSANSHPSDMFVASMGPQGIKNNHAFSHASSISGFQPFIRPRVAFCPEVGFEQKMAGEQNPKLASPS KRITDDDKKEAQSLASGSGSGSAEIKVVEREEGEWSDAEGTANVCAGNSMHEKGKASQFQGMSEVEGTSVMVSMNVSSSVKVIDNTKAESCDRVSPGLDQ GQNDYKNNGSRNSNGNANDDVCMDGQEEIASLSKQREVRGIEASHALKFSTNPGKRKIDQHKEAMLGKKRNRQTMLINIDEVKQAGIMKSSTPRRQPNVT RTVKEVRTVPQPAERSGERPGHPLKDQKQADLPCNDGGFSVESCPPKSESNGDINSAQPAKNRKVNGDSDFSVDTHLPPIQKQSTWKQPAESSWKHPADL RQPKNSQFSNRKPALINQGSMDSKLGNKKYLPVKKSTVASTPYQDTSVERLIREVTNEKFWHHPEDSELQCVPGRFESVEEYVRVFEPLLFEECRAQLYS TWEESAETNAHIMVRIKSIERRERGWYDVIVLPANECKWTFKEGDVAVLSTPRPGTAVRSKRNNTSSSNEDDEEPDINGRVAGTVRRHIPLDSRDPPGAI LHFFVGDSYDPHSKVDEDHILRKLQPRGTWFLTVLGSLATTQREYVALHAFCRLNLQMQAAILKPSSDHFPKYEQQTPAMPECFTQNFVDHLRRTFNGPQ LAAIQWAATHTAAGTSSGVTKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPQSYKQANESNSDNIALGSIDEVLHNMDQNLFR SLSKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQSRAAQAVSVERRTEQLLIKSREEISKWMQELKVQEAYFSGQIADLQN KLNFAAVDGRSQGSVGVDPDVLMARDQNRDALLQNLAAVVESRDKVLVEISRLLILEPRFRAGSNFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSR LTHGFDMVVIDEAAQASEVAVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSE SVANLPDETYYKDPLLRPYLFYDVTHGRESHRGGSVSYQNIHEAQFCLQLYEHLQKSLKSLGMGRITVGIITPYKLQLKCLQQEFSAVLKSEEGKDIYIN TVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRAKRALWVMGNATSLVQSDDWSALVADAKARNCYMNMDSLPKDFFVLKGTLGKGSSNVRGL RLGGPRHRSFDMHMESRSGTPSEDDENSGASVISRNGSFGPFKPPMDNSLDDFDQSGDRSRDAWQYGIQKKQGSSAVVGKRGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30100			P-loop containing nucleoside t...		Potri.005G168300 [exp]	0	1
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	1.00	0.9204
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.004G174700 [exp]	2.44	0.8586
AT5G14720			Protein kinase superfamily pro...		Potri.001G349300 [exp]	3.87	0.7975
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	10.00	0.8024
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	11.35	0.7568	ACA3.2
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	12.84	0.8001
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	13.11	0.8117
					Potri.009G005300 [exp]	13.26	0.8031
AT1G27595			unknown protein		Potri.002G107400 [exp]	15.39	0.8159
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	16.30	0.8070

Compare expression of checked genes

Potri.005G168300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.