Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78060 1070 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 770 / 0 Glycosyl hydrolase family protein (.1) AT3G19620 757 / 0 Glycosyl hydrolase family protein (.1) AT5G64570 749 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 738 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT1G02640 726 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G49360 710 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G09700 424 / 3e-140 Glycosyl hydrolase family protein (.1) AT3G47000 127 / 3e-30 Glycosyl hydrolase family protein (.1) AT3G47050 123 / 5e-29 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094000 [exp] 1309 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 1138 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 1018 / 0 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G197200 [exp] 758 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 754 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.001G089100 [exp] 749 / 0 AT5G10560 988 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G206800 [exp] 748 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.010G141400 [exp] 740 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.003G022900 [exp] 732 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022374 [exp] 1168 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 1044 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 820 / 0 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 743 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010015 [exp] 723 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 716 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10016858 [exp] 610 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10019240 [exp] 272 / 3e-82 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 138 / 7e-38 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10043457 [exp] 124 / 5e-29 AT5G20950 809 / 0.0 Glycosyl hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain CL0159 [poplar] [flax] E-set PF14310 [poplar] [flax] Fn3-like Fibronectin type III-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G168500.1 pacid=42805593 polypeptide=Potri.005G168500.1.p locus=Potri.005G168500 ID=Potri.005G168500.1.v4.1 annot-version=v4.1 ATGAGACCCCAAAACCTCCGTTTCTTTACCTTTACCATCTTCACTGTTATTATTGTCCTCCAAGTTCACTCAACTCAGCCACCATTCTCATGCGACTCGT CAAACCCATCAACAAAGACCTTCCCTTTTTGCAAAACCACTCTTCCCATCAGCCAAAGAGCCAACGATCTGGTGTCCAGGCTAACATTAGAGGAGAAGAT ATCCCAACTCGTTAATTCAGCTCAACCGATTCCAAGACTTGGTATCCCGGGTTATCAGTGGTGGTCCGAGGCATTACACGGCGTTGCCTATGCAGGACCT GGCATTCGTTTCAATGGTACTATTAAGAGGGCCACTAGTTTCCCTCAAGTCATTCTTTCCGCTGCTTCTTTTGATGCCAACCAATGGTATCGCATTAGTC AGGCGATCGGAAAAGAGGCTAGAGCACTGTACAATGCAGGGCAAGCTACAGGGATGACATTCTGGGCACCAAATATCAACATATTTAGGGACCCAAGATG GGGGAGAGGGCAAGAAACACCAGGTGAGGATCCATTGATGACAGGGAAATATGCAGTGTCATACGTGAGAGGGCTTCAAGGGGATTCATTCAAGGGAGGG GAGATTAAAGGGCCACTTCAAGCTTCAGCTTGTTGTAAGCACTTTACTGCTTATGACTTGGAAAACTGGAATGGCACGAGTCGCTATGTTTTTGATGCTT ATGTGACCGCGCAAGATTTAGCAGACACATATCAACCACCATTCAAGAGTTGTGTTGAAGAAGGGCGAGCCAGTGGGATAATGTGTGCTTACAATAGAGT TAATGGAATCCCTAACTGTGCAGATTCCAATTTCCTCTCTCGAACCGCTAGAGCCCAATGGGGTTTTGATGGGTACATCGCATCAGACTGTGATGCGGTT TCCATCATCCATGATGCTCAAGGATACGCCAAAACACCAGAAGATGCTGTGGTTGCTGTGCTTAAAGCTGGCATGGATGTCAACTGTGGATCATACTTGC AGCAACACACCAAAGCAGCCGTGGACCAAAAAAAATTAACTATATCTGAAATAGACAGAGCCCTTCATAACCTCTTCTCTGTAAGAATGAGGTTAGGCCT TTTCAATGGGAATCCTACTGGCCAGCAATTTGGGAACATTGGTCCTGACCAAGTCTGCTCCCAAGAAAACCAGATACTAGCCCTCGATGCAGCCCGTAAT GGCATTGTCCTTTTGAAGAACTCCGCAGGACTCCTCCCACTTTCAAAATCCAAAACCATGTCCCTGGCTGTTATTGGCCCCAATGCCAATTCTGTGCAAA CACTTCTCGGAAACTATGCAGGCCCTCCATGCAAACTTGTCACGCCACTGCAAGCGTTGCAGAGCTATATTAAACACACTATTCCTTACCCAGGTTGTGA CTCAGTTCAATGCTCTTCAGCTTCAATTGTTGGGGCCGTGAATGTAGCAAAAGGGGCGGATCATGTGGTATTGATAATGGGTCTGGACGATACTCAAGAG AAGGAGGGACTTGATCGCAGAGACTTGGTGCTACCTGGGAAGCAACAAGAACTGATTATCAGTGTTGCAAAAGCAGCAAAGAATCCAGTTGTTCTAGTGC TTCTTTCTGGAGGTCCTGTTGATATATCTTTCGCCAAAAATGATAAAAATATCGGAAGCATTTTGTGGGCTGGTTATCCTGGTGAAGCTGGTGCAATTGC TCTTGCAGAAATCATCTTTGGTGACCATAATCCAGGAGGGAAGCTACCGATGACTTGGTATCCACAAGAATTTGTCAAAGTTCCAATGACAGATATGAGG ATGCGACCTGAAACTTCTTCAGGCTATCCTGGACGTACATACAGATTCTACAAAGGGCCAACTGTTTTTGAGTTTGGTTATGGCCTCAGCTACTCGAAAT ATACTTATGAACTAAGAGCTGTCTCCCAAAACAAACTCTACTTGAATCAATCCTCAACAATGCATAAAATCAACAACTTCGACTCAGTTCTGTCCCTATT GGTTTCTGAATTGGGCACGGAATTCTGTGAGCACAACAAATTCCCTGTTAGAATTGAAGTAAAGAACCATGGTGAGATGGCGGGCAAGCATCCAGTTTTA CTATTTGCGAGGCAGACGAAACAAGGAAATGGTAGACCAAGGAAACAGCTGGTTGGATTCCATAGTGTGCAATTAAGTGCAGGGGAAAGAGCTGAAATTG AATTTGAAGTGAGCCCTTGTGAACACCTTAGTAGAACTAATGAAGATGGCCTGATGGTGATGGAGGAAGGAACACATTTCTTAGTTGTAGAAGGTCAAGA GTACCCGATTTCCATTGTAATTTGA
AA sequence Show only first row Show all	>Potri.005G168500.1 pacid=42805593 polypeptide=Potri.005G168500.1.p locus=Potri.005G168500 ID=Potri.005G168500.1.v4.1 annot-version=v4.1 MRPQNLRFFTFTIFTVIIVLQVHSTQPPFSCDSSNPSTKTFPFCKTTLPISQRANDLVSRLTLEEKISQLVNSAQPIPRLGIPGYQWWSEALHGVAYAGP GIRFNGTIKRATSFPQVILSAASFDANQWYRISQAIGKEARALYNAGQATGMTFWAPNINIFRDPRWGRGQETPGEDPLMTGKYAVSYVRGLQGDSFKGG EIKGPLQASACCKHFTAYDLENWNGTSRYVFDAYVTAQDLADTYQPPFKSCVEEGRASGIMCAYNRVNGIPNCADSNFLSRTARAQWGFDGYIASDCDAV SIIHDAQGYAKTPEDAVVAVLKAGMDVNCGSYLQQHTKAAVDQKKLTISEIDRALHNLFSVRMRLGLFNGNPTGQQFGNIGPDQVCSQENQILALDAARN GIVLLKNSAGLLPLSKSKTMSLAVIGPNANSVQTLLGNYAGPPCKLVTPLQALQSYIKHTIPYPGCDSVQCSSASIVGAVNVAKGADHVVLIMGLDDTQE KEGLDRRDLVLPGKQQELIISVAKAAKNPVVLVLLSGGPVDISFAKNDKNIGSILWAGYPGEAGAIALAEIIFGDHNPGGKLPMTWYPQEFVKVPMTDMR MRPETSSGYPGRTYRFYKGPTVFEFGYGLSYSKYTYELRAVSQNKLYLNQSSTMHKINNFDSVLSLLVSELGTEFCEHNKFPVRIEVKNHGEMAGKHPVL LFARQTKQGNGRPRKQLVGFHSVQLSAGERAEIEFEVSPCEHLSRTNEDGLMVMEEGTHFLVVEGQEYPISIVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168500 [exp]	0	1
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.014G072800 [exp]	4.69	0.8691
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.018G151000 [exp]	5.00	0.8827
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	7.54	0.8690
AT2G35520		DAD2	DEFENDER AGAINST CELL DEATH 2,...		Potri.001G136800 [exp]	8.00	0.8643	DAD1.2
AT4G22190			unknown protein		Potri.006G270100 [exp]	23.21	0.8480
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	23.32	0.8202
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	23.66	0.8441
AT2G28230			TATA-binding related factor (T...		Potri.005G126902 [exp]	26.72	0.8061
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.007G147300 [exp]	31.74	0.8318	Pt-MTHFR1.2
					Potri.002G257600 [exp]	31.93	0.8237

Compare expression of checked genes

Potri.005G168500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.