Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78070 649 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 634 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56190 538 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13340 523 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 523 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 66 / 3e-11 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 64 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 59 / 1e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 58 / 8e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 57 / 2e-08 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094100 [exp] 829 / 0 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G000500 [exp] 531 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 530 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 516 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 510 / 5e-180 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147400 [exp] 505 / 3e-178 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G000800 [exp] 170 / 3e-51 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147500 [exp] 111 / 4e-29 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 67 / 2e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041102 [exp] 693 / 0 AT1G78070 622 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036428 [exp] 672 / 0 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037252 [exp] 525 / 0 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 525 / 0 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021975 [exp] 504 / 1e-177 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041268 [exp] 497 / 1e-174 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041007 [exp] 66 / 4e-11 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 66 / 5e-11 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10004167 [exp] 63 / 3e-10 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 61 / 8e-10 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.005G168600.1 pacid=42803652 polypeptide=Potri.005G168600.1.p locus=Potri.005G168600 ID=Potri.005G168600.1.v4.1 annot-version=v4.1 ATGGATCACTTCCACAACAACGATCTCGAGTACGTAGTTAATGATCCTTTTGAAGACGATTTTTTCAGCGAAGATGAACCTCAAAGAAACGACGATTCTG ATGATGCTATGAATTCTGATTTTGAAGATGACTTTGTGTCGAGTAAGCCGAAGACCGATACGTCTGCTTTAGAGGCAAGAAATGGCAAGGATATACAGGG AATCCCCTGGGAGAGGCTTAATTTCACTAGAGATAAGTATCGTGAGACGCGTTTAAAGCAGTATAAGAATTACGAGAACCTCTCTCGCCCTCGCTTCGAG CTTCACAAGGAATGCCTGGAAGTTGAGAAGGGAAAGACTTTCTATGACTTTGAGTTCAACACAAGGCTTGTCAAATCCACAATTGTTCATTTTCAGCTGA GGAATCTGCTGTGGGCAACATCAAAGCATGATGTTTACCTTATGCAAAATTACTCAGCTATGCATTGGTCATCACTACTGCGGCGAGGCAAAGAAGTACT CAATGTGGCCAAGCCAGTTGCTCCAACCCGGCAAAGCCCAGGATTGTTGTCTCAGTCACTCTCCAGAGTGCAGATAAGCACTATGGCTGTCAAAGAGAAC TTAATGGTGGCAGGTGGTTTCCAGGGAGAACTTATTTGCAAGTGTTTGGATCAACCTGGAGTTGCATTCTGCTCAAAGATAACAACAGGTGAAAATGCCA TAACCAATGCAGTGGATGTATACCGTAACCACAATGGCTCAATGAGGATTATGGCCGCGAACAACGATGCTCAAGTTAGAGTGTTTGATGCCGAAACTTT TGCTTCCCTCAATTGTTTCTCCTTCGATTGGTCTGTAAATAACACCTCTGTTAGCCCAGATGGTAAGCTGCTTGCAGTGCTTGGGGACAGTGCTGAGTGC TTGATTGCCGATGCTAATTCTGGTAAAGTGACTGGAAGCCTCAAAGGGCATTTGGATTATTCCTTTTCATCAGCCTGGCACCCTGACGGGCTAATTTTGG CCACTGGAAACCAAGACACTACATGCAGGCTGTGGGATATAAGGAATCTGTCCCAGTCCCTTGCAGTATTAAAAGGGAATATGGGAGCAATAAGAGCTCT AAAGTTCACCTCAGATGGCAAGTTTTTGGCTATGGCTGAGCCTGCAGATTTCGTCCATGTTTTTGATACACAATCTGATTACCTCAAATGCCAGGAGATT GATCTATTTGGGGAGATTGCTGGCATTTCTTTCAGCCCCGATACTGAAGCTCTGTTTGTTGGTGTTGCCGACCGTACTTACGGTAGCTTGTTAGAGTTCA ACAGGAGGCATTACAATTTTTACCTGGACTCAATATTCTAG
AA sequence Show only first row Show all	>Potri.005G168600.1 pacid=42803652 polypeptide=Potri.005G168600.1.p locus=Potri.005G168600 ID=Potri.005G168600.1.v4.1 annot-version=v4.1 MDHFHNNDLEYVVNDPFEDDFFSEDEPQRNDDSDDAMNSDFEDDFVSSKPKTDTSALEARNGKDIQGIPWERLNFTRDKYRETRLKQYKNYENLSRPRFE LHKECLEVEKGKTFYDFEFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSAMHWSSLLRRGKEVLNVAKPVAPTRQSPGLLSQSLSRVQISTMAVKEN LMVAGGFQGELICKCLDQPGVAFCSKITTGENAITNAVDVYRNHNGSMRIMAANNDAQVRVFDAETFASLNCFSFDWSVNNTSVSPDGKLLAVLGDSAEC LIADANSGKVTGSLKGHLDYSFSSAWHPDGLILATGNQDTTCRLWDIRNLSQSLAVLKGNMGAIRALKFTSDGKFLAMAEPADFVHVFDTQSDYLKCQEI DLFGEIAGISFSPDTEALFVGVADRTYGSLLEFNRRHYNFYLDSIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78070			Transducin/WD40 repeat-like su...		Potri.005G168600 [exp]	0	1
AT3G22970			Protein of unknown function (D...		Potri.002G046300 [exp]	1.41	0.7653
ATCG00870		ATCG00870.1, OR...	Protein precursor Ycf15, putat...		Potri.013G000766 [exp]	6.63	0.6284
AT3G13140			hydroxyproline-rich glycoprote...		Potri.001G366600 [exp]	7.93	0.6936
AT3G23200			Uncharacterised protein family...		Potri.010G073000 [exp]	8.12	0.7051
AT3G26720			Glycosyl hydrolase family 38 p...		Potri.002G238200 [exp]	9.16	0.6815
AT5G02520			unknown protein		Potri.004G077400 [exp]	13.41	0.7015
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G119200 [exp]	16.24	0.6390
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.012G079600 [exp]	17.02	0.6823
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.001G124000 [exp]	19.62	0.6998
AT2G01260			Protein of unknown function (D...		Potri.010G120700 [exp]	22.58	0.6410

Compare expression of checked genes

Potri.005G168600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.