Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36050 725 / 0 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 659 / 0 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 238 / 2e-75 Endoplasmic reticulum vesicle transporter protein (.1) AT4G27080 99 / 2e-22 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 87 / 1e-18 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 84 / 2e-17 Thioredoxin protein with domain of unknown function (DUF1692) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094400 [exp] 754 / 0 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G206100 [exp] 627 / 0 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 603 / 0 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 234 / 6e-74 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 228 / 1e-71 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.011G135500 [exp] 91 / 6e-20 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 89 / 5e-19 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036449 [exp] 688 / 0 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036158 [exp] 613 / 0 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 414 / 4e-145 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 343 / 2e-115 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10027795 [exp] 236 / 9e-75 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 180 / 7e-53 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 178 / 7e-52 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 160 / 3e-45 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10043062 [exp] 90 / 2e-19 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 88 / 9e-19 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [poplar] [flax] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter PF13850 [poplar] [flax] ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Representative CDS sequence Show only first row Show all	>Potri.005G168800.1 pacid=42804376 polypeptide=Potri.005G168800.1.p locus=Potri.005G168800 ID=Potri.005G168800.1.v4.1 annot-version=v4.1 ATGGAGGGGTTAATGAGCAAGCTAAGGAATTTGGATGCATATCCAAAAATCAACGAGGATTTCTACAGCCGTACGCTTTCCGGTGGCGTTATCACTCTCG CTTCCTCTGTCGTTATGTTTCTCCTCTTCTTCTCCGAGCTCCGATTATATCTTCATGCGGTAACTGAAACAAAACTAGTGGTGGATACTTCGAGAGGAGA AACTCTACGTATCAATTTTGATGTCACGTTCCCCGCTCTTCCGTGCTCTATTCTTAGCCTTGATGCCATGGATATTAGTGGAGAGCAACATCTTGATGTA AAACATGATATAATTAAGAAAAGACTAGATTTTCATGGAAATGTCATAGAAGCACGGCAAGATGGAATTGGTGCCCCTAAGATTGAAAAGCCTTTGCAGA GGCATGGTGGCAGGCTTGAGCACAACGAGACATACTGTGGCTCCTGTTATGGTGCGGAAGCGTCAGATGAAGACTGCTGTAATTCTTGTGAGGACGTTCG TGAAGCATATCGAAAGAAAGGTTGGGCGGTGACAAATCCGGATTTAATGGACCAGTGCAAAAGAGAGGGATTTCTCCAAAAGATTAAAGATGAAGAGGGT GAAGGATGCAACATTTATGGATTCTTAGAAGTTAATAAGGTGGCTGGAAATTTTCATTTTGCACCTGGGAAGAGTTTTCAGCAATCTGGTGTTCACGTGC ATGATCTGCTGGCATTTCAGAAGGATAGTTTTAATATAACTCACAAGATTAATAGGCTGACTTTCGGAGAATATTTTCCAGGTGTTGTGAATCCTCTTGA TGGTGTGCAATGGACACAAGAAACACCAAGTGGGATGTACCAGTATTTCATCAAGGTAGTACCTACTGTATACACAGATGTGAGTGGACACACTATCCAG TCAAATCAGTTTTCTGTGACTGAACATTTTAGGGGCACTGACATAGGTCGCCTTCAGTCCCTTCCAGGAGTTTTCTTCTTTTATGACCTTTCTCCAATTA AGGTGACTTTCACAGAAGAACATGTTTCGTTCTTACACTTCCTAACAAATGTGTGTGCCATAGTTGGAGGTGTTTTCACTGTTTCTGGCATACTGGATAC ATTTATATATCATGGTCAAAAGGCAATCAAGAAGAAGATGGAAATCGGTAAATTTAGTTGA
AA sequence Show only first row Show all	>Potri.005G168800.1 pacid=42804376 polypeptide=Potri.005G168800.1.p locus=Potri.005G168800 ID=Potri.005G168800.1.v4.1 annot-version=v4.1 MEGLMSKLRNLDAYPKINEDFYSRTLSGGVITLASSVVMFLLFFSELRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDV KHDIIKKRLDFHGNVIEARQDGIGAPKIEKPLQRHGGRLEHNETYCGSCYGAEASDEDCCNSCEDVREAYRKKGWAVTNPDLMDQCKREGFLQKIKDEEG EGCNIYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLAFQKDSFNITHKINRLTFGEYFPGVVNPLDGVQWTQETPSGMYQYFIKVVPTVYTDVSGHTIQ SNQFSVTEHFRGTDIGRLQSLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDTFIYHGQKAIKKKMEIGKFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.005G168800 [exp]	0	1
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.011G064400 [exp]	4.35	0.9186
					Potri.001G297466 [exp]	11.31	0.9066
AT5G27490			Integral membrane Yip1 family ...		Potri.005G033900 [exp]	12.32	0.9151
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.003G074600 [exp]	15.49	0.9029	QRT3.2
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	19.18	0.9051
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	20.34	0.9057
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	20.49	0.9093
AT2G46000			unknown protein		Potri.014G086200 [exp]	25.37	0.8552
AT1G71780			unknown protein		Potri.002G062300 [exp]	26.49	0.8876
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	27.45	0.8912

Compare expression of checked genes

Potri.005G168800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.